PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100261350041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | B3 | ||||||||
Protein Properties | Length: 663aa MW: 72652.9 Da PI: 7.8635 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.6 | 2.2e-13 | 309 | 390 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 f+kvl+ sd+++ grlvlpk +ae++ + + e++ ++++d g +W++++++ +++s++yvl+ G + + +++ Ote100261350041|100261350041 309 FEKVLSASDAGRIGRLVLPKACAEAFfpliD--QSEGIPIKIQDIMGDEWTFQFRFwpNNNSRMYVLE-GVNACIQNMQVQ 386 99***********************9**543..557788***************9989999999***9.************ PP TT-E CS B3 76 egDf 79 +gD+ Ote100261350041|100261350041 387 AGDT 390 ***7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.2E-21 | 306 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-15 | 306 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.35E-18 | 307 | 402 | No hit | No description |
SMART | SM01019 | 5.8E-12 | 309 | 403 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-10 | 309 | 390 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MGSTNCMNEL CRGTTSSEWK KGWSLKRGGF AVLCCRCGSA YENSVFCETF HSEESGWREC 60 RICRKRIHCG CIASRNLHED MDLGGVGCIT CLKNSEIHSV LSLQVPADVS NGTFSKNGIK 120 DVHPVVVENR IDDDRFSTQG LLQSTKATGT TNGSSGLEQQ KRENPLLKTR QSGTQQSSPS 180 TFYKADNNRP REGAKNMFES LAQPSLNLSL TTLSGSSKSI LPFPGGIAGG SKHKVSLREA 240 LHILPKPSKP NSMVGSEKNR ESVSQARAAK PPAEGRGRNQ LLPRYWPRIT DQELQQISGD 300 LKSNIVPLFE KVLSASDAGR IGRLVLPKAC AEAFFPLIDQ SEGIPIKIQD IMGDEWTFQF 360 RFWPNNNSRM YVLEGVNACI QNMQVQAGDT EPGGQLVIGC RKAINDGDAE DSQTPASTSG 420 DSLSGANSDP LLNGGKSDDS LQQSISEKKK AKNIKNKRLL MHNDDAVELR ITWEEAQELL 480 CPSPTAEPTV VVIEDHEFEE FEEPPIFGTR TIFTSGPLGH SCSVPDDISP NDPEPSVPSY 540 EDSKKKKISE QNVAKGEPSG LDALANAAIL GDSITDTVIT TKHPRHRPGC SCIVCIQPRS 600 GQGKHAPACR CNVCSTVRRR FKTLIMRKKR RISVSEKVKE REDVARDDTR SQINESKGQL 660 DLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 6e-61 | 287 | 410 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841792.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL1-like | ||||
Swissprot | Q8W4L5 | 1e-180 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A4D9AD63 | 0.0 | A0A4D9AD63_SALSN; Uncharacterized protein | ||||
STRING | Migut.D00818.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |