PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100259270041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C3H | ||||||||
Protein Properties | Length: 153aa MW: 17235.4 Da PI: 8.4808 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.4e-10 | 64 | 85 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C +f rtG+C+yG++Ck+ H++ Ote100259270041|100259270041 64 CTRFVRTGWCQYGESCKYYHPK 85 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 4.1E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 2.89E-15 | 4 | 50 | No hit | No description |
Pfam | PF06220 | 3.5E-10 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
SMART | SM00356 | 0.0092 | 60 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-7 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-8 | 63 | 85 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 63 | 85 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.15 | 63 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPLGKYHCDY CDKQFQDTPS ARRTHLNGVS HQRAKALWYD AFLRSSQFGL DEVEGLQSIG 60 NGVCTRFVRT GWCQYGESCK YYHPKTNLSN TNAKNMEAVV FRNQMGASPG NLPPSLLPPP 120 EVAFRPIHGD DVAESNRRFW DIRIESKGVP TGV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010659729.1 | 2e-52 | PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2 | ||||
Swissprot | Q0JP11 | 1e-31 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A2G9I7N4 | 1e-55 | A0A2G9I7N4_9LAMI; U1 snRNP-specific protein C | ||||
STRING | Migut.B00859.1.p | 1e-49 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12008 | 18 | 21 |
Publications ? help Back to Top | |||
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