PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100244960001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 387aa    MW: 43641.7 Da    PI: 8.2762
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100244960001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.82.6e-34132188259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpv+kkvers  d++++ei+Y+g+Hnh 
  Ote100244960001|100244960001 132 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVTKKVERSL-DGQITEIIYKGQHNHA 188
                                   8****************************************.***************7 PP
2WRKY103.89.3e-33286344159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Ote100244960001|100244960001 286 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSGGCNVRKHVERAASDRKAVITTYEGKHNHD 344
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-30127190IPR003657WRKY domain
SuperFamilySSF1182909.55E-27130190IPR003657WRKY domain
PROSITE profilePS5081123.066131190IPR003657WRKY domain
SMARTSM007747.9E-39131189IPR003657WRKY domain
PfamPF031069.1E-27132187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36272346IPR003657WRKY domain
SuperFamilySSF1182903.79E-29278346IPR003657WRKY domain
PROSITE profilePS5081138.262281346IPR003657WRKY domain
SMARTSM007742.8E-37286345IPR003657WRKY domain
PfamPF031062.0E-25287344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MICVPECHPE LDDAVYHLRG SSSCLFNRFF SFRSLGYGML WRKQMFLMLL SVGLGQFGMS  60
HQQMLDQISG EAQGQAHLQI QYPSFSSSIS HLRPLPSNAS LQQHIPPPKI IKDSPDFSEP  120
HQKSQPLDKP IDDGYNWRKY GQKQVKGSEF PRSYYKCTHP NCPVTKKVER SLDGQITEII  180
YKGQHNHAQP SKRVKDNGNS QSNQPQVGGP YLSNAQDQGS NQLTPEQVSG SSDSEEVAAV  240
ETRVDDGDED EPEPKRRNIE VQQASSHRTV MEPRIIVQTT SEVDLLDDGY RWRKYGQKVV  300
KGNPYPRSYY KCTSGGCNVR KHVERAASDR KAVITTYEGK HNHDVPAAKN STHRPQNIAA  360
NRGGGMEYAN DQQQAVALLR FKEEQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-40131347878Probable WRKY transcription factor 4
2lex_A1e-40131347878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070970.11e-165probable WRKY transcription factor 3 isoform X2
SwissprotQ9ZQ701e-125WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0D5YA371e-163A0A0D5YA37_SALMI; WRKY protein
STRINGSolyc05g012770.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]