PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100243470021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TCP

Protein Properties

Length: 327aa MW: 36269.6 Da PI: 9.0232

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100243470021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.9	5.1e-40	77	209	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec 73 ++k+drhski T++g+RdRRvRls+++a++fFdLq++LGfdk+skt++WLl+++k+aikel+++ ssss+sec Ote100243470021\|100243470021 77 TAKRDRHSKINTAQGPRDRRVRLSISIARKFFDLQEMLGFDKPSKTLDWLLTKSKAAIKELVQNkrndggsgkSSSSPSEC 157 78************************************************************88888776545555566 PP TCP 74 eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 e ss++ a+ s+ k++ ++k+ a ++++ake t ekm+ik+ Ote100243470021\|100243470021 158 ELISSENGAD---------SKRKNSGKDKQCAVVSSVAKEXXXXXXXXXXXXTLEKMCIKQ 209 3333333333.........445666777777778999999999999999999***9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-37	77	177	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.176	79	137	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MLSRNTYLIP QVPSSHQVNL DGVEVLLXXX XXXXXXXXXX XXXXEVFPGL YLAPALDNAA 60 LFNQGEPSSV ALNRKPTAKR DRHSKINTAQ GPRDRRVRLS ISIARKFFDL QEMLGFDKPS 120 KTLDWLLTKS KAAIKELVQN KRNDGGSGKS SSSPSECELI SSENGADSKR KNSGKDKQCA 180 VVSSVAKEXX XXXXXXXXXX TLEKMCIKQF GGCGENGSDL NPSFQCRNNS NNNQLEFLQL 240 SAGNSSNMNL VNPHCHLSSE AATRDLIEES VVIKRKSKNP VFGLNSNYYM VPSATTNENW 300 DVFGFSSQSN LHAILDQHKF INSNSNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-14	84	137	1	54	Putative transcription factor PCF6
5zkt_B	6e-14	84	137	1	54	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554786.1	1e-71	transcription factor CYCLOIDEA
TrEMBL	A0A096ZGF8	1e-130	A0A096ZGF8_OCIBA; TCP transcription factor (Fragment)
STRING	Migut.H00528.1.p	2e-59	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4333	22	44