PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100229560031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 369aa MW: 42273.9 Da PI: 6.2056 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.8e-09 | 294 | 328 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+++gL+++q+ +WF N+R ++ Ote100229560031|100229560031 294 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 328 669*****************************885 PP | |||||||
2 | ELK | 37.9 | 3.8e-13 | 248 | 269 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s Ote100229560031|100229560031 248 ELKNHLLRKYSGYLSSLKQELS 269 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.6E-22 | 103 | 147 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.4E-22 | 105 | 146 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.0E-27 | 154 | 205 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.9E-23 | 158 | 204 | IPR005541 | KNOX2 |
SMART | SM01188 | 3.5E-7 | 248 | 269 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 248 | 268 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.6E-10 | 248 | 269 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.957 | 268 | 331 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-19 | 269 | 344 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-13 | 270 | 335 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-27 | 273 | 334 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.94E-12 | 280 | 332 | No hit | No description |
Pfam | PF05920 | 1.1E-16 | 288 | 327 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 306 | 329 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MEDYNHEMSE NSNSRCNFLY GGSVLEAAGS NSVYGRSSFH LQSGNCYDQS ENQTVKSESA 60 GAAQDHASRF QFTAISRGYL TAAEDHRRRH DRRQESHDSG EAESIKARII AHPQYSNLLD 120 AYMDCQKVGA PPEVVARLTA VRQELEASQR GAAAARDVTK DPELDQFMEA YYDMLVKYRE 180 ELTKPIHEAM EFMRRVEKQL NLLTNSPLRI FNSNSEEKYE GGSSEDEQEN SGGETEVPEI 240 DPRAEDRELK NHLLRKYSGY LSSLKQELSK KKKKGKLPKD ARQKLLSWWE LHYKWPYPSE 300 SEKVALAEST GLDQKQINNW FINQRKRHWK PSEDMQFMVM DGMHPQNAAA AALYMEGHYM 360 GEGPYRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00675 | ChIP-seq | Transfer from GRMZM2G017087 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022870905.1 | 0.0 | homeotic protein knotted-1 isoform X1 | ||||
Swissprot | Q41330 | 1e-170 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | A0A4D9BBU7 | 0.0 | A0A4D9BBU7_SALSN; Uncharacterized protein | ||||
STRING | XP_009598343.1 | 1e-180 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4973 | 23 | 33 |