PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100229370031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 736aa    MW: 80586.5 Da    PI: 5.7885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100229370031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.8e-19319418198
                                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 
                                   f+k+l+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  +L++g
  Ote100229370031|100229370031 319 FEKTLSASDAGRIGRLVLPKACAEAYfpAINQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAG 398
                                   99**************************888889999***************9989999999***9.************** PP

                                   -EEEEEE-SSSEE..EEEEE- CS
                            B3  78 DfvvFkldgrsefelvvkvfr 98 
                                   D+v+F++++  + +lv++ ++
  Ote100229370031|100229370031 399 DTVIFSRIE-PGNQLVIGCRK 418
                                   ******776.55555666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-29316422IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-20316415IPR015300DNA-binding pseudobarrel domain
CDDcd100172.24E-23317418No hitNo description
PfamPF023621.9E-16319418IPR003340B3 DNA binding domain
PROSITE profilePS5086310.729319420IPR003340B3 DNA binding domain
SMARTSM010192.1E-20319419IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MGSKNCMNEV CRATTLSDWR KGWSLKSGGF AKLCYKCGSA YENSVFCETY HSDESGWREC  60
RICGKIVHCG CIASRHLFEY MEFGGVACIS CAKHLEIHSL QPVQIPCDIL SEKSANKNCS  120
MDVQPIVTEH RVDDEKFSTR KLLQLTRAMG VHNVTSAVDH LKKEENVLRS TDSTKRVPNH  180
TQNGSSIFVK PDYSRPKQGV KDMYESLAHP SLKFSLTSPL GSSNSVLPIP GGIVEVNEQT  240
KSSSLHGQKG RHISPKPPKP SAMLGLEANK GSASQTRVPR PPAEGRGRNQ LLPRYWPRIT  300
DQELQQLSGD LKSTIVPLFE KTLSASDAGR IGRLVLPKAC AEAYFPAINQ SEGIPIRIQD  360
IKGKEWTFQF RFWPNNNSRM YVLEGVTPCI QNMQLQAGDT VIFSRIEPGN QLVIGCRKAN  420
NADTQEPQTP SALNGDSPGE ASFSGVTDAQ TSNGGRISDD SQPQHTTISE KKKARNIKNK  480
RLLMNNDDAT ELRVTWEEAQ ELFRPSLFSE PTIVIVEDHE FEEFEPPVFG KRTVFISRAS  540
GSSCSVPEDY SPMDLDSYTV NKDHKKRRIS DSTASKEGEP SGLDALANAA VLGDNIGDPR  600
AKRETELEKE DIAGLALLDM NSRKNETSGD GKHVDGQLDL NCDPRREDEA VGGENPTTLT  660
DSTVFTASEV NEGQNQNGMP SGEPCLLEGM SAAATVNAAA DEGGGASGEG PDAXXXXXXX  720
XXXXNAVCFC DLLYTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-682974222127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080654.20.0LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1
TrEMBLA0A4D8YV420.0A0A4D8YV42_SALSN; Uncharacterized protein
STRINGMigut.D00818.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365