PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100227020121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 265aa    MW: 30959.6 Da    PI: 9.0226
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100227020121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.71.9e-24117926103
                                   SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  26 nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                                   ns   +d+e+f+ ++Lp+yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F +g+++ll++ikr+k++
  Ote100227020121|100227020121  11 NSSSSMDSESFTINILPRYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEGFLRGQRHLLKNIKRRKTT 79 
                                   555667999********************************999.........**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-241076IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.0E-201676IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.4E-231676IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-201776IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.2E-102537IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043402650IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.2E-103850IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MNPIGAKKDV NSSSSMDSES FTINILPRYF KHNNFSSFVR QLNTYGFKKV DPDKWEFANE  60
GFLRGQRHLL KNIKRRKTTS LSSNQVFESC LEVGSFGLGG EIEQLKRDKQ TLMMELVKLR  120
QQQQQTSSHL KQMGQKLERS EVKQLQMMKF LAMAIRNPSF MLQMAQXXXX XXXXXXXXXX  180
XXXXXXXXXX FWEENDNAYV EEFXXXXXXX XXXXXXXTFA MSSMNKGEQI LXXXXXXXXX  240
XXXXXXXXVD MPFDEGFWGD LINSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-15118244125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.17e-71heat stress transcription factor A-2c
SwissprotQ9LUH82e-60HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A067GG699e-69A0A067GG69_CITSI; Uncharacterized protein
STRINGXP_006489461.12e-69(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113