PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100224380001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 26550.2 Da PI: 7.7095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.6e-15 | 51 | 111 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC........TS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl........gLterqVkvWFqNrRakek 56 ++++++eql Le+ F +++++ e++e+LA+++ rqV vWFqNrRa++k Ote100224380001|100224380001 51 KRKLSEEQLSMLERSFGSEHKLESERKERLAAEVxxxxxxxxXXXPRQVAVWFQNRRARWK 111 45899*******************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 94.8 | 9.2e-31 | 50 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLg........lqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 +kr+ls+eq+++LE+sF +e+kLe+erK++la e+ prqvavWFqnrRAR+k+k++E++y++L++++d+ + Ote100224380001|100224380001 50 RKRKLSEEQLSMLERSFGSEHKLESERKERLAAEVXxxxxxxxxXXPRQVAVWFQNRRARWKAKKMEEEYSKLRSQLDSTV 130 8*******************************99862222222257*********************************** PP HD-ZIP_I/II 75 eenerLekeveeLreelke 93 e++rLe+ev +++e+l e Ote100224380001|100224380001 131 VEKCRLETEVVRMKEQLIE 149 **************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.661 | 45 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-12 | 48 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.92E-10 | 50 | 114 | No hit | No description |
SuperFamily | SSF46689 | 1.75E-12 | 50 | 123 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-12 | 51 | 111 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 55 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNPQFDDLVS HYYPNEIITH FLPEQGAAEK VKVRRRRRKT KGGEGGDLMR KRKLSEEQLS 60 MLERSFGSEH KLESERKERL AAEVXXXXXX XXXXXPRQVA VWFQNRRARW KAKKMEEEYS 120 KLRSQLDSTV VEKCRLETEV VRMKEQLIEA EKEIQRLSEG LRSNSPASSS LSMEANVDPQ 180 FLGDDVFYAH GFEWDDHIYY MXXXXXXXXX ASLLYILANN LIYSPL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016558663.1 | 1e-62 | PREDICTED: homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 3e-58 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A4D9C5W3 | 7e-66 | A0A4D9C5W3_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Solyc02g085630.2.1 | 1e-57 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Publications ? help Back to Top | |||
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