PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100222560021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 279aa MW: 31472.9 Da PI: 6.7994

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100222560021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108	4.5e-34	141	198	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp+vv++tYeg+Hnh Ote100222560021\|100222560021 141 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPSVVITTYEGQHNHX 198 8********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-35	125	198	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-29	132	198	IPR003657	WRKY domain
PROSITE profile	PS50811	31.169	135	200	IPR003657	WRKY domain
SMART	SM00774	4.5E-40	140	199	IPR003657	WRKY domain
Pfam	PF03106	7.0E-27	141	197	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MSEDFTDFFY HQPFHDDQIR PTASAHDLST TFSADHLSFA DFLHGSNXXX XXXXXXXXXX 60 XPSSSAAVEE QTPAAGTAPA TPNSSISSSS AEDSSKGKKD VKEDGEDDIS KKDSKAKKKT 120 EKKQRQPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CPVKKRVERS 180 FQDPSVVITT YEGQHNHXXX XXXXXXXXXX XFAPSMLAPP LLPPDGFPQE LLLHMPHLYG 240 GGGGAFHQQN LSNNYPPQNF HDYGLLQDMI PAVYPKEEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	130	197	7	74	Probable WRKY transcription factor 4
2lex_A	2e-28	130	197	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011085274.1	5e-87	probable WRKY transcription factor 71
Swissprot	Q8VWJ2	1e-53	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A4D9AWL6	6e-99	A0A4D9AWL6_SALSN; Uncharacterized protein
STRING	VIT_10s0003g02810.t01	5e-67	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]