PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100217550011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SBP

Protein Properties

Length: 963aa MW: 106340 Da PI: 6.3474

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100217550011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.5	5.8e-41	127	204	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvCe+hska+++lv ++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Ote100217550011\|100217550011 127 VCQVEDCAADLSKAKDYHRRHKVCEMHSKASKALVGSQMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQT 204 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-32	122	189	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.043	125	202	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-37	126	207	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-29	128	201	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MEAGVGGAWN GIRTSGNGTE TSSLPRRSIA LFLIVRXXXX XXXXXXLETG ISATRASSNT 60 SSSYSDELNR DTRELEKKRR ANAVENNNLG DNLTLNLGGR GYATTGNVEA TVGKKTKLAG 120 AASNRAVCQV EDCAADLSKA KDYHRRHKVC EMHSKASKAL VGSQMQRFCQ QCSRFHALQE 180 FDEGKRSCRR RLAGHNKRRR KTQTDNVSNN TPANNNQTNS YLLMSILKIL SSMHSNRLNH 240 RDDQDLLSHL LQGLASQGSL QWERNISAHL QESPELLNNL AAIGNSELVS MLMSNGSPEQ 300 ISRQEHCSTP SDDMPQKDGD LHVMSQRPGI VLHTQSGSQI YAQGLETSGG GGKMNNFDLN 360 DVYVDSDDGM DEIERSTIPQ GLGDVSIGCP SWVQQDSHQS SPPQTSGNSD SASAQSPSSS 420 SGEAQSHTDR IVFKLFGKEP SDFPNVLRAQ IFDWLSHSPT DIESYIRPGC VILTLYLRLS 480 ESAWEELYCD LSSSLSRLLN FSDDDNFWST GWIYARVQNQ MAFVYNGQVV VNTSLPLETD 540 NFSSILSIKP IAVASSGQAQ FTVKGFNLSR PSSRLLCALE GNYLEANNES MEPVDSLEGQ 600 GQCLQFSCSI PAVTGRGFIE VEDNGLNSSY YPFIVAEEDV CAEIRMLEKE IELDHIQRGT 660 GIIAARSQAM EFIHEMGWLL HKYQLKSRSG HEDSNLCFFP FERFKFLVEF SMDRDWCSVV 720 NKLLNILFSG TVNGSEQPFL KFAMSEMSLL HRAVRKNSRS LVGMLLRYVP EKVADELTGR 780 DGAEDILDAL TDDPRMVGID AWKSAVDSTG FTPENYARLR GHYTYIHLVQ RKINKKAPSG 840 HVXXXXXXXX XXXDISDVLS EGSSINHKAN VEGGATFEIT RPVTTPCGVC ARNLGYRTGS 900 RTLXXXXXXX XXXXXXXAVY AGHSCCLCVC GASVQELSAS SVRVPAIQLG DVGVRLQLNM 960 CVK

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MEAGVGGAWN GIRTSGNGTE TSSLPRRSIA LFLIVRXXXX XXXXXXLETG ISATRASSNT  60
SSSYSDELNR DTRELEKKRR ANAVENNNLG DNLTLNLGGR GYATTGNVEA TVGKKTKLAG  120
AASNRAVCQV EDCAADLSKA KDYHRRHKVC EMHSKASKAL VGSQMQRFCQ QCSRFHALQE  180
FDEGKRSCRR RLAGHNKRRR KTQTDNVSNN TPANNNQTNS YLLMSILKIL SSMHSNRLNH  240
RDDQDLLSHL LQGLASQGSL QWERNISAHL QESPELLNNL AAIGNSELVS MLMSNGSPEQ  300
ISRQEHCSTP SDDMPQKDGD LHVMSQRPGI VLHTQSGSQI YAQGLETSGG GGKMNNFDLN  360
DVYVDSDDGM DEIERSTIPQ GLGDVSIGCP SWVQQDSHQS SPPQTSGNSD SASAQSPSSS  420
SGEAQSHTDR IVFKLFGKEP SDFPNVLRAQ IFDWLSHSPT DIESYIRPGC VILTLYLRLS  480
ESAWEELYCD LSSSLSRLLN FSDDDNFWST GWIYARVQNQ MAFVYNGQVV VNTSLPLETD  540
NFSSILSIKP IAVASSGQAQ FTVKGFNLSR PSSRLLCALE GNYLEANNES MEPVDSLEGQ  600
GQCLQFSCSI PAVTGRGFIE VEDNGLNSSY YPFIVAEEDV CAEIRMLEKE IELDHIQRGT  660
GIIAARSQAM EFIHEMGWLL HKYQLKSRSG HEDSNLCFFP FERFKFLVEF SMDRDWCSVV  720
NKLLNILFSG TVNGSEQPFL KFAMSEMSLL HRAVRKNSRS LVGMLLRYVP EKVADELTGR  780
DGAEDILDAL TDDPRMVGID AWKSAVDSTG FTPENYARLR GHYTYIHLVQ RKINKKAPSG  840
HVXXXXXXXX XXXDISDVLS EGSSINHKAN VEGGATFEIT RPVTTPCGVC ARNLGYRTGS  900
RTLXXXXXXX XXXXXXXAVY AGHSCCLCVC GASVQELSAS SVRVPAIQLG DVGVRLQLNM  960
CVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	127	201	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079486.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A075FJ61	0.0	A0A075FJ61_SALMI; SQUAMOSA promoter binding protein-like 10 (Fragment)
STRING	VIT_07s0005g02260.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]