PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100208920251

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SBP

Protein Properties

Length: 955aa MW: 106518 Da PI: 7.226

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100208920251	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.1	6.8e-40	124	201	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvC+vhska++++v ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Ote100208920251\|100208920251 124 VCQVKDCKADLSSAKDYHRRHKVCDVHSKATSAFVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 201 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.3E-32	118	186	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.71	122	199	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-36	123	203	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-28	125	198	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.18E-8	736	845	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.6E-8	741	858	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.83E-7	747	845	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MIGDGMGXXX XXXXXXPLNH VPTDCRSRQH FQVGSNASLS NGVNGVSNNL LLGSGETTML 60 ENERGNRELE KRRRVVEGEN GEVGRLDLKL GHQEYPITLG EVDELEGKSG KKTKVSGAPS 120 SRAVCQVKDC KADLSSAKDY HRRHKVCDVH SKATSAFVGN VLQRFCQQCS RFHVLQEFDE 180 GKRSCRRRLA GHNRRRRKTH PENVLSQANQ NDERGSNYLL ISLLRILSNI QYNSSDQTKD 240 QDLLSHLLKN LASLASTANE SNHNESLPAS QDLQNAGTSL GAAQKDLPTT TSLVTTVCES 300 DLTQKRTITD KTAGLVQNAS ASQSPLVFRT NTSNSVQENT DTIGRTKLNY IDLNNEYDGS 360 QDCFDDHPNT FENRGNTSPA GPLWLCKDSQ RSSPPQNSGT SGSTSSQSPS TSSGDTQSRT 420 DRIVFKLFGK DPNDFPLVLR QQILDWLSNS PTDMESYIRP GCIILTIYLR MDKSCWDRLY 480 CDLTSSLMRL LDSSTDPFWR TGWIYARVQH RVTFMYNGQV VLDTPLPVKN QQSCRISSIK 540 PIAVAVSEGA QFVVKGFNLS RSTARLLCTL EGKFLIQENC SDMRGEADSL IEHGEIQSFT 600 FSCAVPDIVG RGFIEVEDYG LSSSFFPFIV AEKDVCSEIC TLESLIELPD AANTDKKALE 660 IRNQALEFIH EMGWLLHRAH LKIRLTETTP YMDPFSFERL RWLIEFSIDH DWCAVVKKLL 720 NTLFDGIVDL GQENSDVQAL QDIGLVHHAV RRNCKPMVEF LLTYTGDRKL LNEGHYLFRP 780 DAPGPGGLTP LHIAASLDSC ENVLDALTAD PGSVGIEAWK TARDSTGLTP HDYACLRGHY 840 PYVHLVQRKL NKRSGKGHVV VDIPGTLSDD SKKPKMAKYA TLETERRMTG HCRECEQKLG 900 YARQRGSVNI YRPAMVSLVA IAAVCVCTAL LFKSSPEVFC SFHPFRWELL KYGSQ

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MIGDGMGXXX XXXXXXPLNH VPTDCRSRQH FQVGSNASLS NGVNGVSNNL LLGSGETTML  60
ENERGNRELE KRRRVVEGEN GEVGRLDLKL GHQEYPITLG EVDELEGKSG KKTKVSGAPS  120
SRAVCQVKDC KADLSSAKDY HRRHKVCDVH SKATSAFVGN VLQRFCQQCS RFHVLQEFDE  180
GKRSCRRRLA GHNRRRRKTH PENVLSQANQ NDERGSNYLL ISLLRILSNI QYNSSDQTKD  240
QDLLSHLLKN LASLASTANE SNHNESLPAS QDLQNAGTSL GAAQKDLPTT TSLVTTVCES  300
DLTQKRTITD KTAGLVQNAS ASQSPLVFRT NTSNSVQENT DTIGRTKLNY IDLNNEYDGS  360
QDCFDDHPNT FENRGNTSPA GPLWLCKDSQ RSSPPQNSGT SGSTSSQSPS TSSGDTQSRT  420
DRIVFKLFGK DPNDFPLVLR QQILDWLSNS PTDMESYIRP GCIILTIYLR MDKSCWDRLY  480
CDLTSSLMRL LDSSTDPFWR TGWIYARVQH RVTFMYNGQV VLDTPLPVKN QQSCRISSIK  540
PIAVAVSEGA QFVVKGFNLS RSTARLLCTL EGKFLIQENC SDMRGEADSL IEHGEIQSFT  600
FSCAVPDIVG RGFIEVEDYG LSSSFFPFIV AEKDVCSEIC TLESLIELPD AANTDKKALE  660
IRNQALEFIH EMGWLLHRAH LKIRLTETTP YMDPFSFERL RWLIEFSIDH DWCAVVKKLL  720
NTLFDGIVDL GQENSDVQAL QDIGLVHHAV RRNCKPMVEF LLTYTGDRKL LNEGHYLFRP  780
DAPGPGGLTP LHIAASLDSC ENVLDALTAD PGSVGIEAWK TARDSTGLTP HDYACLRGHY  840
PYVHLVQRKL NKRSGKGHVV VDIPGTLSDD SKKPKMAKYA TLETERRMTG HCRECEQKLG  900
YARQRGSVNI YRPAMVSLVA IAAVCVCTAL LFKSSPEVFC SFHPFRWELL KYGSQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-31	116	198	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269\|PubMed:16554053}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00060	PBM	Transfer from AT3G60030	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100677.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_020555128.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9S7P5	0.0	SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBL	A0A075FET0	0.0	A0A075FET0_SALMI; SQUAMOSA promoter binding protein-like 13 (Fragment)
STRING	Migut.G00007.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Publications ? help Back to Top
Jung S, et al. Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. BMC Genomics, 2006. 7: p. 81 [PMID:16615871] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]