PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100197300081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 332aa    MW: 37667.9 Da    PI: 8.0102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100197300081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-06326226
                                  -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                  k++ C+ffa  G C  Gd C FaH+
  Ote100197300081|100197300081  3 KRVMCKFFAH-GACLKGDHCEFAHD 26
                                  8999**6666.*************7 PP
2zf-CCCH25.52.3e-083454526
                                  --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                                  +C f+++ G C+yG+rC+F H+
  Ote100197300081|100197300081 34 ICTFYQK-GLCSYGGRCRFEHV 54
                                  7******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.718128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-5326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7426IPR000571Zinc finger, CCCH-type
PfamPF156633.4E-8660No hitNo description
PROSITE profilePS5010313.9672956IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.765110137IPR000571Zinc finger, CCCH-type
SMARTSM003560.031111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.74E-12169243No hitNo description
Gene3DG3DSA:3.30.40.103.1E-9174238IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00114178238No hitNo description
SMARTSM001841.1E-6179236IPR001841Zinc finger, RING-type
PROSITE profilePS5008911.87179237IPR001841Zinc finger, RING-type
PfamPF000973.5E-6179236IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180203212IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.169266295IPR000571Zinc finger, CCCH-type
SMARTSM003560.47266294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAKRVMCKFF AHGACLKGDH CEFAHDFKAP SNNICTFYQK GLCSYGGRCR FEHVKVSRSP  60
SENIALPVDF SSLGSDVSTA DATAEWGGSC RHNEMLDDYY NIVRSNYVGP SDLPICSFAA  120
AGDCPRGQNC PHIHGDQCPF CDKRCLHPFR PQEREVHLRS CEKWHKRLEA LRRSQEMECC  180
VCLENVLLKP TPAERKFGIL SECDHPFCIS CIRNWRNSSP SSGFDVNSAL RACPICRKLS  240
YFVIPSVVWY SSKEEKQDIV RSYKEKLRSI DCKHFDFGNG SCPFGTSCFY KHAFRDGRLE  300
EVSVRHLGAS DGDTVIAKDI RLSDFLRSLQ IR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087508.11e-175E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-161C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2G9HML21e-174A0A2G9HML2_9LAMI; Putative E3 ubiquitin ligase
STRINGXP_004513288.11e-166(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]