PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100190950201

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 1382aa MW: 152682 Da PI: 6.7931

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100190950201	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00085	1267	1292	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ykC+ C++sF +k +L H r+ + Ote100190950201\|100190950201 1267 YKCEvdGCTMSFQTKAELLLHKRNqC 1292 99********************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00545	1.5E-14	22	62	IPR003349	JmjN domain
PROSITE profile	PS51183	13.716	23	64	IPR003349	JmjN domain
Pfam	PF02375	2.1E-14	24	57	IPR003349	JmjN domain
PROSITE profile	PS51184	32.737	302	476	IPR003347	JmjC domain
SMART	SM00558	3.6E-44	302	476	IPR003347	JmjC domain
SuperFamily	SSF51197	7.69E-26	302	474	No hit	No description
Pfam	PF02373	4.4E-34	335	459	IPR003347	JmjC domain
SMART	SM00355	7.9	1267	1289	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.55E-5	1289	1327	No hit	No description
PROSITE profile	PS50157	11.302	1290	1319	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.11	1290	1314	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.2E-4	1291	1318	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	1292	1314	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.2E-9	1319	1344	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0026	1320	1344	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.718	1320	1349	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	1322	1344	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.26E-9	1330	1372	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-9	1345	1373	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.286	1350	1381	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.43	1350	1376	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	1352	1376	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009741	Biological Process	response to brassinosteroid
GO:0009826	Biological Process	unidimensional cell growth
GO:0033169	Biological Process	histone H3-K9 demethylation
GO:0048577	Biological Process	negative regulation of short-day photoperiodism, flowering
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1382 aa Download sequence Send to blast
MNFMAGAMKN VDIPRWLERL PLAPEFRPTD TEFADPIAYI SKIEKEASAF GICKVIPPLP 60 KPSRKYVLHN LNKSLSKCPE LDVDVNLVPF PKTDGGVRNN CDRTVGESRA VFTTRQQELG 120 CEKGKKVKGA VGDQAFGAQK QVWKSGKVYT LEQFEAMAKN FAKSTLGIVK EIDPLLIEAM 180 FWKATSEKPI YVEYANDVPG SGFSEPEGLL RYFDRRXXXX XXXXNSFDRN NLGSSDKKND 240 HVEIVNYVSN TKDSGSQNNP NSCTETTFNS LPSKCMHDEA SFSGRKDMQD SNNEMEGTAG 300 WKLSNSPWNL QVMARSAGSL TRFMPDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL 360 HMGSPKTWYS VPGEYAFNFE EAIRLHAYGG NPDRLGYLLH VALSLLGEKT TVLSPEVIVA 420 SGIPCCRLVQ YPGEFVVTFP RAYHIGFSHG FNCGEAANFG TSKWLTIAKE AAVRRAAMNY 480 LPMLSHQQLL YLLTMSFISR IPRSLLPGVR SSRLRDRQKE ERELSVKRAF IEDILCENSR 540 LTVLQKHSFY HAVLWDVDSL PSASKESVLC HDADASVLIS AGENSPGKEN NVHDVNDLSN 600 YIGAIGYDLG GDDLAYDFQI ESGTLPCVAC GILGFPFMAI VQPSKAALSN LLNVDALAVS 660 VGSGLTCNTL EDAKYKCESS KKEQNQPTLS LVVQSPLPDC SLSSNHAAVS PEVKIAMGWD 720 ISNAFLRPRV FCLEHAIEIE ELLSSRGGAN VLVICHSDFQ KIKAHAAAIA EEIAVPFSYT 780 EILLGNSAPE DLNLIDAAIE REEQVACSKD WTSLLNINLQ HCVRMKKSCS PSANVQHLPS 840 LGGLFRDATP ISDKSSTKWL SRKLRSTRHQ RRPLQCKPAD SNLTAEKDMK RKKEHQMAKK 900 DIKLIQYSRK RYKVSASAGM HVSDPRVPGE KDDYIAGNTP GVEIDGKKFS GLPMLPFDDG 960 ISESQCEHVI ASSSGGVVEN SFEHHSANSS IASTLVANVE AQTRICLKEK FGGSAHDVKA 1020 VDGVGQKNDG CYSETVGSST DKNGMNHVAE IGIQREEEIV DEVAVARETC DRLAENDCAS 1080 PDDVQSDGSC EIKEASRHDD SSNSSENDGP SPLCDEQMEA ISDQLLVDSE ASKTSSSEGQ 1140 QPVQMGVDGE SNSPLSGEGD TNVGDNGKTG ISSENHVLGV SKTMAQSKPK ARSNRKRELL 1200 GLQLEGQLLA SGFIRSPCEG LRSRAREDSS IRVTDNLEPA PTIKKSRKTT DQSIPRRSKK 1260 ENPKGCYKCE VDGCTMSFQT KAELLLHKRN QCPVDGCRKK FNSHKYAMQH QRVHDDDRPL 1320 KCPWDGCTMS FKWAWARTEH LRVHTGERPY VCKIKGCDLT FRFVSDFSRH RRKTGHYVSP 1380 PA

Sequence ? help Back to Top

Protein Sequence Length: 1382 aa Download sequence Send to blast

MNFMAGAMKN VDIPRWLERL PLAPEFRPTD TEFADPIAYI SKIEKEASAF GICKVIPPLP  60
KPSRKYVLHN LNKSLSKCPE LDVDVNLVPF PKTDGGVRNN CDRTVGESRA VFTTRQQELG  120
CEKGKKVKGA VGDQAFGAQK QVWKSGKVYT LEQFEAMAKN FAKSTLGIVK EIDPLLIEAM  180
FWKATSEKPI YVEYANDVPG SGFSEPEGLL RYFDRRXXXX XXXXNSFDRN NLGSSDKKND  240
HVEIVNYVSN TKDSGSQNNP NSCTETTFNS LPSKCMHDEA SFSGRKDMQD SNNEMEGTAG  300
WKLSNSPWNL QVMARSAGSL TRFMPDDIPG VTSPMVYIGM LFSWFAWHVE DHELHSLNFL  360
HMGSPKTWYS VPGEYAFNFE EAIRLHAYGG NPDRLGYLLH VALSLLGEKT TVLSPEVIVA  420
SGIPCCRLVQ YPGEFVVTFP RAYHIGFSHG FNCGEAANFG TSKWLTIAKE AAVRRAAMNY  480
LPMLSHQQLL YLLTMSFISR IPRSLLPGVR SSRLRDRQKE ERELSVKRAF IEDILCENSR  540
LTVLQKHSFY HAVLWDVDSL PSASKESVLC HDADASVLIS AGENSPGKEN NVHDVNDLSN  600
YIGAIGYDLG GDDLAYDFQI ESGTLPCVAC GILGFPFMAI VQPSKAALSN LLNVDALAVS  660
VGSGLTCNTL EDAKYKCESS KKEQNQPTLS LVVQSPLPDC SLSSNHAAVS PEVKIAMGWD  720
ISNAFLRPRV FCLEHAIEIE ELLSSRGGAN VLVICHSDFQ KIKAHAAAIA EEIAVPFSYT  780
EILLGNSAPE DLNLIDAAIE REEQVACSKD WTSLLNINLQ HCVRMKKSCS PSANVQHLPS  840
LGGLFRDATP ISDKSSTKWL SRKLRSTRHQ RRPLQCKPAD SNLTAEKDMK RKKEHQMAKK  900
DIKLIQYSRK RYKVSASAGM HVSDPRVPGE KDDYIAGNTP GVEIDGKKFS GLPMLPFDDG  960
ISESQCEHVI ASSSGGVVEN SFEHHSANSS IASTLVANVE AQTRICLKEK FGGSAHDVKA  1020
VDGVGQKNDG CYSETVGSST DKNGMNHVAE IGIQREEEIV DEVAVARETC DRLAENDCAS  1080
PDDVQSDGSC EIKEASRHDD SSNSSENDGP SPLCDEQMEA ISDQLLVDSE ASKTSSSEGQ  1140
QPVQMGVDGE SNSPLSGEGD TNVGDNGKTG ISSENHVLGV SKTMAQSKPK ARSNRKRELL  1200
GLQLEGQLLA SGFIRSPCEG LRSRAREDSS IRVTDNLEPA PTIKKSRKTT DQSIPRRSKK  1260
ENPKGCYKCE VDGCTMSFQT KAELLLHKRN QCPVDGCRKK FNSHKYAMQH QRVHDDDRPL  1320
KCPWDGCTMS FKWAWARTEH LRVHTGERPY VCKIKGCDLT FRFVSDFSRH RRKTGHYVSP  1380
PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6a57_A	2e-53	1267	1378	23	134	Lysine-specific demethylase REF6
6a58_A	2e-53	1267	1378	23	134	Lysine-specific demethylase REF6
6a59_A	2e-53	1267	1378	23	134	Lysine-specific demethylase REF6
6ip0_A	2e-51	284	490	136	346	Transcription factor jumonji (Jmj) family protein
6ip4_A	2e-51	284	490	136	346	Arabidopsis JMJ13
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269\|PubMed:15377760, ECO:0000269\|PubMed:18467490, ECO:0000269\|PubMed:19946624}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084321.1	0.0	probable lysine-specific demethylase ELF6
Swissprot	Q6BDA0	0.0	ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBL	A0A4D8ZAF4	0.0	A0A4D8ZAF4_SALSN; Histone demethylase JARID1
STRING	XP_009589507.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4835	17	21

Publications ? help Back to Top
Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A. PLoS ONE, 2013. 8(7): p. e67987 [PMID:23976921] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Crevillén P, et al. Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state. Nature, 2014. 515(7528): p. 587-90 [PMID:25219852] Yang H,Howard M,Dean C Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74 [PMID:27482092]