PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100189380031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 732aa    MW: 80123.8 Da    PI: 6.3999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100189380031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.5e-14316397179
                                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 
                                   f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  ++++g
  Ote100189380031|100189380031 316 FEKVLSASDAGRIGRLVLPKACAEAFfpLIDQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAG 395
                                   99***********************9**445557788***************9989999999***9.************** PP

                                   -E CS
                            B3  78 Df 79 
                                   D+
  Ote100189380031|100189380031 396 DT 397
                                   97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.4E-15313397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-22313397IPR015300DNA-binding pseudobarrel domain
CDDcd100172.83E-18314397No hitNo description
SMARTSM010191.8E-10316415IPR003340B3 DNA binding domain
PROSITE profilePS508638.572316415IPR003340B3 DNA binding domain
PfamPF023621.8E-11316397IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MGSKTCMNDM CRATTSSEWK KGWTLKLGGF ALLCYRCGSA YENSVFCETF HSEESGWREC  60
RICGKQTHCG CVASRYLHEY MDFGGVGCIT CLKQLEIHSA QSLQIPGDFP NGTVITNGIK  120
DVXXXXXXXX XXXXXXXXXR LLHLTKAGGA IDGSSGFEQL KHDDPLLKTK QSSKRFPNLT  180
QHSSPSIFLK GDNSRPREGA NSMYESLAQP SLNFSFTAAS GSSNTTLNFP GGIAEGSEQS  240
KGSFQQALHI PPKPPKLSSM VGSETIKETV SQARIARPPA EGRGRNQLLP RYWPRITDQE  300
LQQLSGDLKS NIVPLFEKVL SASDAGRIGR LVLPKACAEA FFPLIDQSEG IPIRIQDIKG  360
KEWTFQFRFW PNNNSRMYVL EGVTPCIQNM QVQAGDTGEI VEFPKCFNLE IMDDSQTPAS  420
TSGDSPGETS FSGANGNLLS NGGRASDDSL QQSISENKAK NITKKRLLMH SDDAMELRIT  480
WEEAQDLFRP SPTAEPTVVM VEDHEFEEFE EPPIFGKRTI FTSGPSGRSC SAPDDISLKG  540
LEPCAPSYKD SKKRKNSEKK APKEGEASGL DALATAAVLG GDNISGAAEC SVGATTRHPR  600
HRPGCSCIVC IQPPSGKGKH EPTCNCNVCS TVRRRFETLM MRKKKRQSES VAEISQGNEK  660
AGDETKQPDN RNNVIGNEAE DEDGSKGRLD LNCDPHREDE ILTRTAGMSL TTLMNTVALG  720
KNEESVVEGE QS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-562943972105B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080654.20.0LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1
TrEMBLA0A4D9AD630.0A0A4D9AD63_SALSN; Uncharacterized protein
STRINGMigut.D00818.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365