PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100189380031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | B3 | ||||||||
Protein Properties | Length: 732aa MW: 80123.8 Da PI: 6.3999 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.2 | 3.5e-14 | 316 | 397 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G + ++++g Ote100189380031|100189380031 316 FEKVLSASDAGRIGRLVLPKACAEAFfpLIDQSEGIPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQVQAG 395 99***********************9**445557788***************9989999999***9.************** PP -E CS B3 78 Df 79 D+ Ote100189380031|100189380031 396 DT 397 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.4E-15 | 313 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-22 | 313 | 397 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.83E-18 | 314 | 397 | No hit | No description |
SMART | SM01019 | 1.8E-10 | 316 | 415 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.572 | 316 | 415 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-11 | 316 | 397 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MGSKTCMNDM CRATTSSEWK KGWTLKLGGF ALLCYRCGSA YENSVFCETF HSEESGWREC 60 RICGKQTHCG CVASRYLHEY MDFGGVGCIT CLKQLEIHSA QSLQIPGDFP NGTVITNGIK 120 DVXXXXXXXX XXXXXXXXXR LLHLTKAGGA IDGSSGFEQL KHDDPLLKTK QSSKRFPNLT 180 QHSSPSIFLK GDNSRPREGA NSMYESLAQP SLNFSFTAAS GSSNTTLNFP GGIAEGSEQS 240 KGSFQQALHI PPKPPKLSSM VGSETIKETV SQARIARPPA EGRGRNQLLP RYWPRITDQE 300 LQQLSGDLKS NIVPLFEKVL SASDAGRIGR LVLPKACAEA FFPLIDQSEG IPIRIQDIKG 360 KEWTFQFRFW PNNNSRMYVL EGVTPCIQNM QVQAGDTGEI VEFPKCFNLE IMDDSQTPAS 420 TSGDSPGETS FSGANGNLLS NGGRASDDSL QQSISENKAK NITKKRLLMH SDDAMELRIT 480 WEEAQDLFRP SPTAEPTVVM VEDHEFEEFE EPPIFGKRTI FTSGPSGRSC SAPDDISLKG 540 LEPCAPSYKD SKKRKNSEKK APKEGEASGL DALATAAVLG GDNISGAAEC SVGATTRHPR 600 HRPGCSCIVC IQPPSGKGKH EPTCNCNVCS TVRRRFETLM MRKKKRQSES VAEISQGNEK 660 AGDETKQPDN RNNVIGNEAE DEDGSKGRLD LNCDPHREDE ILTRTAGMSL TTLMNTVALG 720 KNEESVVEGE QS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 9e-56 | 294 | 397 | 2 | 105 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080654.2 | 0.0 | LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | A0A4D9AD63 | 0.0 | A0A4D9AD63_SALSN; Uncharacterized protein | ||||
STRING | Migut.D00818.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |