PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100189350241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 589aa MW: 66495.3 Da PI: 5.3912 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.5 | 1.2e-09 | 340 | 377 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV++WF N R + Ote100189350241|100189350241 340 FEHflHPYPKDSEKIMLARQTGLTRSQVSNWFINARVR 377 664459******************************88 PP | |||||||
2 | BELL | 58.9 | 1.2e-19 | 234 | 273 | 1 | 40 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeav 40 e+qelq+k +kLls+l+eVd+rY+qy++q+q+v+ssF++ Ote100189350241|100189350241 234 EKQELQNKLTKLLSMLDEVDRRYRQYYHQMQIVVSSFDIQ 273 689**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 9.4E-26 | 166 | 287 | IPR006563 | POX domain |
Pfam | PF07526 | 4.5E-31 | 172 | 273 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.325 | 318 | 381 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.70E-13 | 321 | 382 | No hit | No description |
SMART | SM00389 | 4.3E-10 | 321 | 385 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-18 | 322 | 388 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-29 | 324 | 387 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.6E-18 | 338 | 377 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MLYSKDPASS SHSSTPILQG NTIMYMNFPS SSEPYSDAIA NNSQSCMDVP PVTSDSNTSS 60 QEVLLNFRGS QAFENQLNTW KDERNEMLMM HQNLQGQGLS LSLSTHVPLH VPSIPYQNES 120 GDFPLILGNN AMIHGEENRG RNVSFENEDS FANADGAGDV SSYGMPNIAR NIPNSKYLRA 180 AQELLDEVVN VKKAIKEQNG RKDSKEVEGA SKDGVSVSDP SSSTTPKTEV SAAEKQELQN 240 KLTKLLSMLD EVDRRYRQYY HQMQIVVSSF DIQAARRSLG EEDGSSNEKG VGISRLRYVD 300 QQLRQQRALQ QIGMMQQQHA WRPQRGLPES SVSILRAWLF EHFLHPYPKD SEKIMLARQT 360 GLTRSQVSNW FINARVRLWK PMVEEMYKEE TGDADMDSNS SSETNTKPAA KASDKAAEEI 420 HHHGTTSMEQ AMERKSDEMN DMEMMGSDVN SIYQTREGRK QGAESGLFED AVAETSERFM 480 AAGYHVSEFE RFGNIGGVSL TXXXXXXXXX WLCMMAHIML SCHSEKPVYI TLQLLPWAMI 540 MQILNAWIQE TGSTGLFRLC FRHLCDRGFW IRTISYPMRQ EDVAFSPIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 327 | 385 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 327 | 385 | 5 | 63 | Homeobox protein Meis2 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088451.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SIW1 | 9e-94 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A4D9C6L4 | 0.0 | A0A4D9C6L4_SALSN; Uncharacterized protein | ||||
STRING | XP_006487349.1 | 1e-167 | (Citrus sinensis) | ||||
STRING | XP_006423388.1 | 1e-167 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10205 | 22 | 26 |
Publications ? help Back to Top | |||
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