PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185770021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 287aa    MW: 32173.1 Da    PI: 7.9993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185770021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000246887221
                                  EETTTTEEESSHHHHHHHHH CS
                       zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                                  +C+ Cgk F ++  L  H++
  Ote100185770021|100185770021 68 SCKECGKAFQSWKALFGHMK 87
                                  6******************7 PP
2zf-C2H2130.00031215237123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp+C k+F++   L  H r+H
  Ote100185770021|100185770021 215 HECPICFKVFPSGQALGGHKRSH 237
                                   79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-5632No hitNo description
Gene3DG3DSA:3.30.160.605.6E-4631IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031931IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-5931IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.186790IPR007087Zinc finger, C2H2
SMARTSM003550.0186789IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.16E-86889No hitNo description
PfamPF139125.1E-76989IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-46990IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.16E-8210237No hitNo description
SMARTSM003550.074215237IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-12215238IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974215237IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEKDQEQKHT CKFCGKSFPC GRSLGGHMRS HFITISSQSD HRKNHEKPPK KKKTSKFAED  60
DEYTTQKSCK ECGKAFQSWK ALFGHMKCHS VNVTPRNCLD EDSWIMDSQS DNEAATPFNR  120
RKRSDRTMKR CITTTASSSL TVTNSVSEID QHEQEEVALS LIILSRDKGE WADNSAQLAS  180
HKKFKGCCAP ENSLETENSN NQSENLVSEK KSRDHECPIC FKVFPSGQAL GGHKRSHLIN  240
TAAETEKPAR GIRGFLDLNL PAPVEEECGE FKPWWVGPGP VLGLLSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.13e-58zinc finger protein ZAT4-like
TrEMBLA0A2G9HIF74e-71A0A2G9HIF7_9LAMI; Uncharacterized protein
STRINGXP_009623743.13e-46(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241