PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100185000051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 355aa    MW: 38319.4 Da    PI: 8.4811
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100185000051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.39.2e-4371147177
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+g+eqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ 
  Ote100185000051|100185000051  71 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVIVAGHEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 147
                                   6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3565133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.33469146IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-4170151IPR004333Transcription factor, SBP-box
PfamPF031101.5E-3272145IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEKGXXXXXX XXXAGPDSIN GLKFGKKIYF EGVSSGLHPK TGGAPPPETA LPPSPAKKGR  60
TAAVQGGQPP RCQVEGCKVD LSDAKAYYSR HKVCGMHSKS PKVIVAGHEQ RFCQQCSRFH  120
QLPEFDQGKR SCRRRLAGHN ERRRKPPPRS LLSPRYGSFS PSIFEDRSKT GGFVMDFTAY  180
PALTGRDPWP NTSSERGIGN QASIAGKYNL PVQSNSQNPL SDLLQDTPPY SGPGVSSDGC  240
FNGVSDSSSA LSLLSTQPWG SRTRSTSLGA SNFLGTNGDT MVQPPGAVIG QFAYDQADDA  300
LHEIPPDLGL GQTSHAANDQ FIGELGLAQP NEGHFHELDH SRGYDASLHH MHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-30721451184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075166.11e-178squamosa promoter-binding-like protein 9
TrEMBLA0A075FFM30.0A0A075FFM3_SALMI; SQUAMOSA promoter binding protein-like 6 (Fragment)
STRINGEOY094561e-126(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241