PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100168610001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 322aa MW: 36308.2 Da PI: 4.6484 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 218.1 | 4.6e-67 | 2 | 313 | 92 | 374 |
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfA 169 f++ +aN aIl+a++g +vHi+Df+i++++QWp+L++aLa++p+gpp lRi +v+ + + ++ e+g+rL++fA Ote100168610001|100168610001 2 SFGFCAANGAILRATQGFPTVHILDFSITHCVQWPTLIDALAKQPNGPPLLRISVVSWRPRVppfLNVSIDEIGQRLSNFA 82 699******************************************************96666888999************* PP GRAS 170 eelgvpfefnvl................vakrledl..eleeLrvkp.......gEalaVnlvlqlhrlldesvsles... 222 + +vpfefnv+ + + + l +l++L++k al+Vn++ l +l+de+ + + Ote100168610001|100168610001 83 KFREVPFEFNVIqlgaaeededpsssasL--NYDLLlsQLNTLSIKLradegsaSSALVVNCQNWLRYLPDEDITNSLdht 161 ************99999999888776441..22222224444443334466777889*************99876554457 PP GRAS 223 .erdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +rd++L+lv++l+P ++++v++++d+ +s+ ++ r++++++y++ fd+le+ lp++s +r+ +E +g +i n+v e Ote100168610001|100168610001 162 cYRDSFLELVRDLRPCMLTIVDEDCDLgSSTGLASRITSCFNYMWIPFDALETFLPKNSPQRMEYESD-IGHKIDNIVGFE 241 89*************************88889************************************.************ PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g++r+er e+ k ++r+ +aGF ++p+ e+++ ++k+ll +++ g+ ++++++ lvl+Wk+++ v +++W+ Ote100168610001|100168610001 242 GFQRIERLESSTKLNNRMATAGFMSAPFCEETVREVKMLLDEHA-SGWGMKKDEDMLVLTWKGHNAVYATVWT 313 ********************************************.8899***********************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.725 | 1 | 294 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-64 | 2 | 313 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
HSFGFCAANG AILRATQGFP TVHILDFSIT HCVQWPTLID ALAKQPNGPP LLRISVVSWR 60 PRVPPFLNVS IDEIGQRLSN FAKFREVPFE FNVIQLGAAE EDEDPSSSAS LNYDLLLSQL 120 NTLSIKLRAD EGSASSALVV NCQNWLRYLP DEDITNSLDH TCYRDSFLEL VRDLRPCMLT 180 IVDEDCDLGS STGLASRITS CFNYMWIPFD ALETFLPKNS PQRMEYESDI GHKIDNIVGF 240 EGFQRIERLE SSTKLNNRMA TAGFMSAPFC EETVREVKML LDEHASGWGM KKDEDMLVLT 300 WKGHNAVYAT VWTPHAYPLF SE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 4e-37 | 2 | 314 | 126 | 420 | Protein SHORT-ROOT |
5b3h_E | 4e-37 | 2 | 314 | 126 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077907.1 | 1e-168 | scarecrow-like protein 32 | ||||
TrEMBL | A0A2G9FYW2 | 1e-167 | A0A2G9FYW2_9LAMI; Uncharacterized protein | ||||
STRING | XP_009792999.1 | 1e-148 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10303 | 22 | 27 |