PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100168610001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 322aa    MW: 36308.2 Da    PI: 4.6484
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100168610001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS218.14.6e-67231392374
                          GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfA 169
                                    f++ +aN aIl+a++g  +vHi+Df+i++++QWp+L++aLa++p+gpp lRi +v+    +    + ++ e+g+rL++fA
  Ote100168610001|100168610001   2 SFGFCAANGAILRATQGFPTVHILDFSITHCVQWPTLIDALAKQPNGPPLLRISVVSWRPRVppfLNVSIDEIGQRLSNFA 82 
                                   699******************************************************96666888999************* PP

                          GRAS 170 eelgvpfefnvl................vakrledl..eleeLrvkp.......gEalaVnlvlqlhrlldesvsles... 222
                                   +  +vpfefnv+                +  + + l  +l++L++k          al+Vn++  l +l+de+ + +    
  Ote100168610001|100168610001  83 KFREVPFEFNVIqlgaaeededpsssasL--NYDLLlsQLNTLSIKLradegsaSSALVVNCQNWLRYLPDEDITNSLdht 161
                                   ************99999999888776441..22222224444443334466777889*************99876554457 PP

                          GRAS 223 .erdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                    +rd++L+lv++l+P ++++v++++d+ +s+ ++ r++++++y++  fd+le+ lp++s +r+ +E   +g +i n+v  e
  Ote100168610001|100168610001 162 cYRDSFLELVRDLRPCMLTIVDEDCDLgSSTGLASRITSCFNYMWIPFDALETFLPKNSPQRMEYESD-IGHKIDNIVGFE 241
                                   89*************************88889************************************.************ PP

                          GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   g++r+er e+  k ++r+ +aGF ++p+ e+++ ++k+ll +++  g+ ++++++ lvl+Wk+++ v +++W+
  Ote100168610001|100168610001 242 GFQRIERLESSTKLNNRMATAGFMSAPFCEETVREVKMLLDEHA-SGWGMKKDEDMLVLTWKGHNAVYATVWT 313
                                   ********************************************.8899***********************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.7251294IPR005202Transcription factor GRAS
PfamPF035141.6E-642313IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
HSFGFCAANG AILRATQGFP TVHILDFSIT HCVQWPTLID ALAKQPNGPP LLRISVVSWR  60
PRVPPFLNVS IDEIGQRLSN FAKFREVPFE FNVIQLGAAE EDEDPSSSAS LNYDLLLSQL  120
NTLSIKLRAD EGSASSALVV NCQNWLRYLP DEDITNSLDH TCYRDSFLEL VRDLRPCMLT  180
IVDEDCDLGS STGLASRITS CFNYMWIPFD ALETFLPKNS PQRMEYESDI GHKIDNIVGF  240
EGFQRIERLE SSTKLNNRMA TAGFMSAPFC EETVREVKML LDEHASGWGM KKDEDMLVLT  300
WKGHNAVYAT VWTPHAYPLF SE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B4e-372314126420Protein SHORT-ROOT
5b3h_E4e-372314126420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077907.11e-168scarecrow-like protein 32
TrEMBLA0A2G9FYW21e-167A0A2G9FYW2_9LAMI; Uncharacterized protein
STRINGXP_009792999.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227