PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100164500051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 277aa    MW: 29675.2 Da    PI: 6.9123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100164500051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH512.5e-16100146455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Ote100164500051|100164500051 100 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 146
                                   6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.69E-1890150No hitNo description
SuperFamilySSF474591.57E-2093156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-2093156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.89896145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-14100146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSSFLQILLQ NSSSSAATSD SATASAAAGG LFSGGGAVAE SSTSVSFSDP SCFFARESGR  60
TKYSTRGKNL ASSCEEPEAC DIPANPTLPR SSKRSRAAEV HNLSEKRRRS RINEKLKALQ  120
NLIPNSNKTD KASMLDEAIE YLKQLQLQVQ MLTMRNGLSL HPGYSLGSLQ SMLTPTGGLD  180
LDEGNPLRGT EPVPRDQDIF MQTSLGPTNH VSPTLPVLAP NSTDPEMLPN YIPPMQNRFG  240
LLNHLASTKD ICRDDTLSRL QLDISCSGNN SSPGVSS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074391.21e-113transcription factor ALC-like
TrEMBLA0A0H3Y8W41e-140A0A0H3Y8W4_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.C00561.1.p1e-105(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75432328