PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100150890051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 502aa    MW: 55174.2 Da    PI: 4.8215
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100150890051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.48.9e-07235255526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C+ f + G C  Gd+C +aHg
  Ote100150890051|100150890051 235 PCPEFKK-GACVKGDSCEYAHG 255
                                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.86E-1232138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-1151145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.91271141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7367195IPR002110Ankyrin repeat
PfamPF127966.3E-971138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002971101IPR002110Ankyrin repeat
CDDcd002041.81E-1073138No hitNo description
PROSITE profilePS500888.71106141IPR002110Ankyrin repeat
SMARTSM002480.94106138IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.101.2E-4227257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69230257IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5230256IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.432265289IPR000571Zinc finger, CCCH-type
SMARTSM0035637265288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MCCDSENKQI PSNFEMEGGL ASQKKCSKLL ELAATDDLAG FVCEVEERGR DVDEVSFWYG  60
RSFGLKKMGF EERTPIMIAA LYGSTEVLKY ILETGLVDVN RACGSDGATA LHCAAAGGSW  120
SSVEVVELLT AAAADNNLEL LLNGTSSEGD VRVIEGRKTP EPAREGTEKK EYPIDVSLPD  180
INNGVYGSDE FRMYSFKVKP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYN YTCVPCPEFK  240
KGACVKGDSC EYAHGVFESW LHPAQYRTRL CKDEMGCSRK VCFFAHKPED LRPFRMADLA  300
PTNLDDVFGS LDPSLLSQLQ SPTGLQIRQN MSQLRASYPS NVSSSXXXXX XXXXXXXXXX  360
GFGFESSSAA VAQAVMNSRS ASFAKRSQSF IDRSGGGYRY GPSGHVQQKL SEWSAPDGKL  420
EWGFSGEEVN XXXXXXXXXX XASFGFRSGN SGVVLPPSDV DEPDVSWVNS LVKDVPSGGG  480
GGEAAPPHWL EQMYIEQEQV VA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084902.11e-165zinc finger CCCH domain-containing protein 29
SwissprotQ9LUZ41e-124C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A4D9ABZ20.0A0A4D9ABZ2_SALSN; Uncharacterized protein
STRINGXP_009622998.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245