PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100140410031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 290aa    MW: 31462.3 Da    PI: 9.1945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100140410031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.52.2e-19161194134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Ote100140410031|100140410031 161 CSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKAR 194
                                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.822155191IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-19155206IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13155194No hitNo description
Gene3DG3DSA:3.30.50.105.4E-16159194IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.28E-12160188No hitNo description
PfamPF003204.2E-17161194IPR000679Zinc finger, GATA-type
PROSITE patternPS003440161186IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MNLGFPPSPF PMEQMNQHEH DQHHPAFSFG LNQQFVSSSS SSSASCHIFF NSTTQDHSAF  60
YHPQLYQPHH HTQDEYYGYH GGSSYEMENK VENGLKLSLW KKEDEVVATK DGDRVVKWMA  120
NKGDGIAGGN NEVKKVKMKP SCSLETDVSS NSSSYSPIRV CSDCHTTKTP LWRSGPKGPK  180
SLCNACGIRQ RKARRAMAAA GSGGGGVSDA AKVKEKMGKS GNSSQLKKRC KVAATAGGGG  240
GSSNSSEKKM GFEDFLINLS NKIAFHRVFP QDEKEAAILL MALSSGLVHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.21e-92LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A2G9GSX11e-92A0A2G9GSX1_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000114492e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249