PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100127090141

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 519aa MW: 56145.6 Da PI: 6.1221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100127090141	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.3e-09	335	383	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Ote100127090141\|100127090141 335 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 383 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.07E-17	330	401	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.85E-11	330	387	No hit	No description
PROSITE profile	PS50888	15.485	332	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	333	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.6E-6	335	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	338	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MDVVEKDSSV EASNANDDQV NYHGPNVSSD WQVNGNNLAN TSMGMISMCN SMVESSACSS 60 APMVDSFCAP VWDHPITGQN LGYCDANVQN DATTSSNLGP IRADLGWNPN TMLRGGMFLP 120 PGSGIVPHFP ADSGFIERAA RFSCFSGGGF GEMMNPFSVP DPLNPYSRSL GVVQGDVVGG 180 NGSKLLHEMQ PQRLEMSKQG TEGSPFKNEM RSESFHDEAK QGVRVSGHES DEAECSGRGP 240 QEELHCVNGE SSGKGLGSKK RKRGGQDAQN DEKNETPTRS TETGKDMVEM KQKADQNTSN 300 VKPGGKNGKQ GSQGSADQPK EEYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP 360 GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL NFNIEGFLAK DMLHPRGGVS 420 SSLGLLPDMS VPFPPIHHQP QPGLIQTCLP SNSTEALRRP INLQSPSVCG GFKDPSSQVS 480 NVWEDELHNI VHMGFNSTAP PSTQDLTGPL PPGHMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MDVVEKDSSV EASNANDDQV NYHGPNVSSD WQVNGNNLAN TSMGMISMCN SMVESSACSS  60
APMVDSFCAP VWDHPITGQN LGYCDANVQN DATTSSNLGP IRADLGWNPN TMLRGGMFLP  120
PGSGIVPHFP ADSGFIERAA RFSCFSGGGF GEMMNPFSVP DPLNPYSRSL GVVQGDVVGG  180
NGSKLLHEMQ PQRLEMSKQG TEGSPFKNEM RSESFHDEAK QGVRVSGHES DEAECSGRGP  240
QEELHCVNGE SSGKGLGSKK RKRGGQDAQN DEKNETPTRS TETGKDMVEM KQKADQNTSN  300
VKPGGKNGKQ GSQGSADQPK EEYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP  360
GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL NFNIEGFLAK DMLHPRGGVS  420
SSLGLLPDMS VPFPPIHHQP QPGLIQTCLP SNSTEALRRP INLQSPSVCG GFKDPSSQVS  480
NVWEDELHNI VHMGFNSTAP PSTQDLTGPL PPGHMKAEP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077884.1	0.0	transcription factor bHLH49
TrEMBL	A0A4D9BNU7	0.0	A0A4D9BNU7_SALSN; Uncharacterized protein
STRING	XP_006484279.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50