PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100117090011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GeBP
Protein Properties Length: 281aa    MW: 31683.2 Da    PI: 9.9975
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100117090011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.53.2e-3159153397
                        DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfske 83 
                                   +++ wseeDei++L G+i+f+a+++++p +d++af++f+kk++  +++k ql  Ki+rLKkK+ ++++k k+gke ++s++
  Ote100117090011|100117090011  59 AKKFWSEEDEIIILNGMIEFAAQNKSDPISDLNAFHDFLKKKLPRDFTKIQLQHKIKRLKKKYVNNKSKEKEGKERTLSNK 139
                                   6789***************************************************************************** PP

                        DUF573  84 hdqkifelskkiWg 97 
                                   h+q +++lsk +Wg
  Ote100117090011|100117090011 140 HEQRAYDLSKELWG 153
                                   *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.0E-2960153IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGVAESAVKP LASKPKEETQ KASDGAKKAR SKPNAAEVVT PTKSAAVKRP SEDTDAKDAK  60
KFWSEEDEII ILNGMIEFAA QNKSDPISDL NAFHDFLKKK LPRDFTKIQL QHKIKRLKKK  120
YVNNKSKEKE GKERTLSNKH EQRAYDLSKE LWGNETMSEK AIGSPKSNAK ANATASRKTP  180
NKKANLVENG EVKDVKNAVL VRCDGDQSLS TRMPNHGSCV ASVEEIMLMD GVKLYEMGKG  240
FEGEDEWRKL RVEELELYKK YLELRTAQTK LVLSIMKERD Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096164.12e-90GLABROUS1 enhancer-binding protein-like
TrEMBLA0A2Z7D2M71e-66A0A2Z7D2M7_9LAMI; Mediator-associated protein 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947