PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100111970121
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 579aa    MW: 63819.8 Da    PI: 9.372
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100111970121genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16263296134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs+C++tkTp+WR gp g  tLCnaCG++yr+ +
  Ote100111970121|100111970121 263 CSHCQSTKTPQWRWGPLGRNTLCNACGVRYRSGR 296
                                   *******************************987 PP
2GATA603e-19491525135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C++C++tkTp+WR+gp g++tLCnaCG++yr+ +l
  Ote100111970121|100111970121 491 CAHCQSTKTPQWREGPLGPRTLCNACGVRYRSGRL 525
                                   *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.6E-12257307IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.925257293IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13260320No hitNo description
Gene3DG3DSA:3.30.50.101.8E-12261294IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.23E-13262309No hitNo description
PfamPF003202.6E-14263296IPR000679Zinc finger, GATA-type
SMARTSM004013.1E-16485535IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.556485521IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14487546No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13489522IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.89E-14490541No hitNo description
PfamPF003204.3E-17491525IPR000679Zinc finger, GATA-type
PROSITE patternPS003440491516IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MNMVEFGNNL DPDKEFDVLR SILDFPMECL EECEDVEDWD VSNPECLGPI PSNVLLMGPP  60
IMSDEMFNFQ HPSLSAQPVA PDDAHNFVVC IFYVDVDGKG LCCLNYMQKR SLILLRLSAI  120
AGLPDLTKPP KHVDTSPSRT PPLRKFAKVQ ESPSCCIQSP VSVLESSGSH PRERSLSIEF  180
GNVIPVRSRS KRVRYAGINP WLLAAHGLST SKQAPNASKI KESRKILCQK PVAMDLLKNS  240
PRNVDSSLDV SGPTHLQCTS KKCSHCQSTK TPQWRWGPLG RNTLCNACGV RYRSGRLFPE  300
YRPAASPTFT LSQHSNSHRK VTEMRNKANL STAKIKIEID EFPQQKQLAK HVDNAVPLQI  360
VGAPKQTKLA KHDDTSQKNH ASVEDSCAFC TGTRVSVLES SGSFSRERRL SSISTRSKRI  420
KSAGTNPSSL ALPSSSGKTS NTIRGEENRK VLFQLPVATD APRNDEHSLE VSDPASPQNA  480
PKSGDARTKK CAHCQSTKTP QWREGPLGPR TLCNACGVRY RSGRLVPEYR PAASPTFVPS  540
KHSNLHSKVV QMIKAEHTSL RPGVEIKVPL TSPQPEFVP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552412.11e-82GATA transcription factor 11-like
TrEMBLA0A4D8ZJM21e-84A0A4D8ZJM2_SALSN; Uncharacterized protein
STRINGPGSC0003DMT4000208761e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149