PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100106570001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 273aa    MW: 31584.2 Da    PI: 5.97
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100106570001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS158.56e-49213184218
                          GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164
                                   f+e  P++k++++++NqaI+ea+ege++vH+iD+ +++++QW aL+q L++Rpegpp+lRiTg+++    +ke le++++ 
  Ote100106570001|100106570001   2 FFEFLPFMKVAFVITNQAIVEAMEGEKMVHVIDLKATEPAQWCALIQDLSARPEGPPHLRITGIHQ----QKEVLEQMAHI 78 
                                   99****************************************************************....9********** PP

                          GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                                   L++ Ae+l++pf+fn+ v+++le+l++e+Lrvk+gEal ++++lqlh+ll +++
  Ote100106570001|100106570001  79 LTDEAEKLDLPFQFNP-VVTKLENLDFEKLRVKTGEALGISSMLQLHTLLGSEG 131
                                   ****************.799*****************************97765 PP
2GRAS21.82e-07169201246278
                          GRAS 246 adhnsesFlerflealeyysalfdsleaklpre 278
                                   +d n+++++er++e+l++y+alfd++e++lpr 
  Ote100106570001|100106570001 169 CDDNGKKLMERVSESLYFYAALFDCMESSLPRG 201
                                   788***************************986 PP
3GRAS81.61.4e-25202270306374
                          GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                   rerhe+lekW +r++  GF +vp+s++ + qak+l++ +k dgy++++e+gs+v++W+drpL+svSaWr
  Ote100106570001|100106570001 202 RERHERLEKWIQRMDFGGFVNVPVSYYGMLQAKRLVQSYKCDGYKIKDENGSVVICWQDRPLFSVSAWR 270
                                   69******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.1431250IPR005202Transcription factor GRAS
PfamPF035142.1E-462131IPR005202Transcription factor GRAS
PfamPF035146.9E-5169201IPR005202Transcription factor GRAS
PfamPF035144.8E-23202270IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MFFEFLPFMK VAFVITNQAI VEAMEGEKMV HVIDLKATEP AQWCALIQDL SARPEGPPHL  60
RITGIHQQKE VLEQMAHILT DEAEKLDLPF QFNPVVTKLE NLDFEKLRVK TGEALGISSM  120
LQLHTLLGSE GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXCD DNGKKLMERV  180
SESLYFYAAL FDCMESSLPR GRERHERLEK WIQRMDFGGF VNVPVSYYGM LQAKRLVQSY  240
KCDGYKIKDE NGSVVICWQD RPLFSVSAWR FRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-351273101382Protein SCARECROW
5b3h_A9e-361273100381Protein SCARECROW
5b3h_D9e-361273100381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728244.11e-116scarecrow-like protein 3
SwissprotQ9LPR82e-61SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A444Z8941e-117A0A444Z894_ARAHY; Uncharacterized protein
STRINGXP_006470721.11e-110(Citrus sinensis)
STRINGXP_006446239.11e-110(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1604136
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]