PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100106570001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | GRAS | ||||||||
Protein Properties | Length: 273aa MW: 31584.2 Da PI: 5.97 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 158.5 | 6e-49 | 2 | 131 | 84 | 218 |
GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetger 164 f+e P++k++++++NqaI+ea+ege++vH+iD+ +++++QW aL+q L++Rpegpp+lRiTg+++ +ke le++++ Ote100106570001|100106570001 2 FFEFLPFMKVAFVITNQAIVEAMEGEKMVHVIDLKATEPAQWCALIQDLSARPEGPPHLRITGIHQ----QKEVLEQMAHI 78 99****************************************************************....9********** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218 L++ Ae+l++pf+fn+ v+++le+l++e+Lrvk+gEal ++++lqlh+ll +++ Ote100106570001|100106570001 79 LTDEAEKLDLPFQFNP-VVTKLENLDFEKLRVKTGEALGISSMLQLHTLLGSEG 131 ****************.799*****************************97765 PP | |||||||
2 | GRAS | 21.8 | 2e-07 | 169 | 201 | 246 | 278 |
GRAS 246 adhnsesFlerflealeyysalfdsleaklpre 278 +d n+++++er++e+l++y+alfd++e++lpr Ote100106570001|100106570001 169 CDDNGKKLMERVSESLYFYAALFDCMESSLPRG 201 788***************************986 PP | |||||||
3 | GRAS | 81.6 | 1.4e-25 | 202 | 270 | 306 | 374 |
GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 rerhe+lekW +r++ GF +vp+s++ + qak+l++ +k dgy++++e+gs+v++W+drpL+svSaWr Ote100106570001|100106570001 202 RERHERLEKWIQRMDFGGFVNVPVSYYGMLQAKRLVQSYKCDGYKIKDENGSVVICWQDRPLFSVSAWR 270 69******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 29.143 | 1 | 250 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-46 | 2 | 131 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.9E-5 | 169 | 201 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-23 | 202 | 270 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MFFEFLPFMK VAFVITNQAI VEAMEGEKMV HVIDLKATEP AQWCALIQDL SARPEGPPHL 60 RITGIHQQKE VLEQMAHILT DEAEKLDLPF QFNPVVTKLE NLDFEKLRVK TGEALGISSM 120 LQLHTLLGSE GXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXCD DNGKKLMERV 180 SESLYFYAAL FDCMESSLPR GRERHERLEK WIQRMDFGGF VNVPVSYYGM LQAKRLVQSY 240 KCDGYKIKDE NGSVVICWQD RPLFSVSAWR FRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-35 | 1 | 273 | 101 | 382 | Protein SCARECROW |
5b3h_A | 9e-36 | 1 | 273 | 100 | 381 | Protein SCARECROW |
5b3h_D | 9e-36 | 1 | 273 | 100 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023728244.1 | 1e-116 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 2e-61 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A444Z894 | 1e-117 | A0A444Z894_ARAHY; Uncharacterized protein | ||||
STRING | XP_006470721.1 | 1e-110 | (Citrus sinensis) | ||||
STRING | XP_006446239.1 | 1e-110 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16041 | 3 | 6 |
Publications ? help Back to Top | |||
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