PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100100390081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NF-YA | ||||||||
Protein Properties | Length: 292aa MW: 31563.7 Da PI: 8.8465 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 71.7 | 1.6e-22 | 160 | 205 | 12 | 58 |
CBFB_NFYA 12 qrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 ++Il+RRq+Rak+e ekkl +ksrkpylheSRh+hA+rR+RgsgGrF Ote100100390081|100100390081 160 HGILRRRQSRAKAELEKKL-IKSRKPYLHESRHQHAIRRERGSGGRF 205 89*****************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 9.1E-23 | 147 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 27.429 | 148 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-15 | 151 | 173 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.7E-18 | 160 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-15 | 182 | 205 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MQSKSKTVNQ AETYPYSTNS TVCSETWWNN TAYNSFCPRT MRGSASDSSS TEQSGDGQSQ 60 SEGDDTGKHS PNITSFQPDK GYTLEDVHLQ RGEPTLNPRA DGSITQPVQL ELVGHSVAAA 120 SNPYDPYYGG MVAAYGQPMD ATAPGDGTGA CLXXXXXXXH GILRRRQSRA KAELEKKLIK 180 SRKPYLHESR HQHAIRRERG SGGRFAKKSD TDNSKATGSG SSQAGSSSGS EVLAKSSGRK 240 VIGNLQNSNI SNFRKQMNLQ EAECQSHSGQ TGDGPSSQQR ELIQSNHALA MQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-12 | 160 | 221 | 13 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090024.1 | 1e-118 | nuclear transcription factor Y subunit A-1 isoform X2 | ||||
Refseq | XP_011090025.1 | 1e-118 | nuclear transcription factor Y subunit A-1 isoform X2 | ||||
TrEMBL | A5PGU3 | 1e-100 | A5PGU3_ANTMA; YA4 | ||||
STRING | Migut.N02320.1.p | 2e-94 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |