PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100099030081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 323aa MW: 36048.2 Da PI: 7.7212

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100099030081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	41.3	3.1e-13	172	222	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fp + C+ edp++v++tYeg+H+h+ Ote100099030081\|100099030081 172 LDDGYRWRKYGQKAVKNSPFPSMW-------CEKXX-XXXXXEDPSTVVTTYEGTHTHP 222 59*****************765.......66555.455566*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-15	157	224	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-14	164	224	IPR003657	WRKY domain
PROSITE profile	PS50811	16.593	167	224	IPR003657	WRKY domain
SMART	SM00774	1.8E-13	172	223	IPR003657	WRKY domain
Pfam	PF03106	7.9E-9	173	222	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEEAKQKVAT RDNSVANTAS SSKNQTMTIN QEISSSFSKP QTADADHHHH YKPCSSLGFM 60 EDFSCPSSAF DDFLHNIISD TFIPPPPEYS NNPATPNNSS SISSSSTEAA ASDVHKKDAI 120 LDYXXXXXXX XXXXXXXXXX XNNHKSKLKK KNQKRQREPR FAFVTKSEID HLDDGYRWRK 180 YGQKAVKNSP FPSMWCEKXX XXXXXEDPST VVTTYEGTHT HPCPITPRGA AAYGLVPPAG 240 GGASSSSLIV MPQMLHYXXX XXXXYFTNST HPPLIFKNSS ANINPRVPPS FQETPLSSSL 300 RDHGLLQDML PSQMLKEPKG DRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-12	165	224	10	77	Probable WRKY transcription factor 4
2lex_A	2e-12	165	224	10	77	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100744.2	2e-55	probable WRKY transcription factor 48, partial
TrEMBL	A0A0D5Y9Z7	3e-75	A0A0D5Y9Z7_SALMI; WRKY protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79