PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100092620021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family RAV
Protein Properties Length: 291aa    MW: 33524.8 Da    PI: 8.8221
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100092620021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.48.7e-092875255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  ++kGV    ++g W A+I+       + +r++lg+f ++  Aa a++ a+ kl+g
  Ote100092620021|100092620021 28 RFKGVV-PQQNGHWGAQIYA------NhRRIWLGTFKSEICAAMAYDSAAIKLRG 75
                                  578885.556899****999......44**********99*************98 PP
2B390.21.5e-28148244190
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ltpsdv+k++rlv+pk++a +h       +++   +++l l+d++  +W+++++y+k+s+++v+t+GW++Fvk++gL
  Ote100092620021|100092620021 148 FQKELTPSDVGKLNRLVIPKRYAVKHfpnvphpDSERVDQVQLELYDREMSVWKFRYCYWKSSQSFVFTRGWNRFVKEKGL 228
                                   99**************************9999966667999**************************************** PP

                                   -TT-EEEEEE-SSSEE CS
                            B3  75 kegDfvvFkldgrsef 90 
                                   +++D++ F++ ++ ++
  Ote100092620021|100092620021 229 RANDTLSFYMYHSPRG 244
                                   *********7665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.0032883IPR001471AP2/ERF domain
SMARTSM003802.6E-192889IPR001471AP2/ERF domain
CDDcd000181.16E-212883No hitNo description
Gene3DG3DSA:3.30.730.102.9E-162883IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-142884IPR016177DNA-binding domain
PfamPF008473.5E-42975IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.0E-32143261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-27145242IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-25147238No hitNo description
PROSITE profilePS5086313.634148256IPR003340B3 DNA binding domain
PfamPF023623.7E-25148241IPR003340B3 DNA binding domain
SMARTSM010191.5E-21148252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MLSIISHSKV KGNDEASDSK CKRSRMERFK GVVPQQNGHW GAQIYANHRR IWLGTFKSEI  60
CAAMAYDSAA IKLRGGDSHR NFPFTNITIL EPKFQSHFST DAVVNMIRDG SYSSKFADFL  120
RSQQGEIEIG LNPSSIHGDG DFSCTLLFQK ELTPSDVGKL NRLVIPKRYA VKHFPNVPHP  180
DSERVDQVQL ELYDREMSVW KFRYCYWKSS QSFVFTRGWN RFVKEKGLRA NDTLSFYMYH  240
SPRGPHSFLV IDVAAKDDET EENTEPEDEQ SYRKFPITQA RGFKLFGVQI D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-2914723613100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086824.11e-157AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6885e-92RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2Z7CBN51e-140A0A2Z7CBN5_9LAMI; Uncharacterized protein
STRINGXP_006473975.11e-110(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339