PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100085400061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 274aa    MW: 31359.2 Da    PI: 6.1109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100085400061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-1881134356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Ote100085400061|100085400061  81 KKRRLSMEQVKTLEKNFELANKLEPERKMQLARTLGLQPRQIAIWFQNRRARWK 134
                                   45689************************************************9 PP
2HD-ZIP_I/II130.46.9e-4280172193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrls eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a+k+ene+L+
  Ote100085400061|100085400061  80 EKKRRLSMEQVKTLEKNFELANKLEPERKMQLARTLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAVKAENESLQ 160
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L++e+++
  Ote100085400061|100085400061 161 AQNHKLHAEIMA 172
                                   *******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.9E-1974138IPR009057Homeodomain-like
PROSITE profilePS5007117.26576136IPR001356Homeobox domain
SMARTSM003891.1E-1679140IPR001356Homeobox domain
CDDcd000861.85E-1581137No hitNo description
PfamPF000462.7E-1581134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-1983143IPR009057Homeodomain-like
PRINTSPR000311.0E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5116132IPR000047Helix-turn-helix motif
PfamPF021832.8E-15136176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTCSTEMAFF HSNFMLQTPH EDDPNHPSTS LPPILASSTP HQDHLFHGVG SLVGKRALCE  60
EMNINQGEDE LSDDGSQLGE KKRRLSMEQV KTLEKNFELA NKLEPERKMQ LARTLGLQPR  120
QIAIWFQNRR ARWKTKQLEK DYDLLKRQFE AVKAENESLQ AQNHKLHAEI MALKTREPTE  180
SINLNKETEG SCSNRSENSS EIKLDISRNP ATDSPISNRP GLFGPTKLFQ NSSRPEIQGS  240
KMDQSVKEES LCNIFCGMDD QTGFWPWLEQ QNFN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.11e-154homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-109ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G9GFL11e-160A0A2G9GFL1_9LAMI; Transcription factor HEX
STRINGVIT_01s0026g01950.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]