PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100084160061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 701aa MW: 78378.4 Da PI: 9.479

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100084160061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H Ote100084160061\|100084160061 77 KCEKCSREFCSPINYRRHVRVH 98 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	76	98	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MPAAKLCSSG SLNAIKSDDE NDSLDSFIKQ AIGKEPLLPS PRTVDSPVHW IQLLHALDQP 60 DLPGWPLLTP VKVQMQKCEK CSREFCSPIN YRRHVRVHRR SLKINKEWHK NRDLLAAFWD 120 KLLLQQAGKV MSFNDIMLKV YVLFLQHHLY ICIWCLNYPQ DISGSSVVSA LASSLCRPGV 180 WTLPQPYVKA GATLLDIIQA KPSRLPIPSQ ELFSILDDAS ERTFLCAGTA ESVQNYVFDG 240 ETAKNSLELK NLVALASFLF EQLLVKAWVA DKDAEALRYQ KLLVEEEEAA QKRRAVLLER 300 KKQKKRRQKE QKAREQYYGC SRDLNDYVDA VDRPTSAEAS GASSPSGSNA NSQDMPTTLD 360 SVEPPNKESD EDIEAQFDKS SEHKTQGDPP AVELQMVGAN GHLHVATNRL QAPKLQRASR 420 HGLHANLNLR TSKPEHTHKL GPSKERSQQN ANKVWTKKLK SSNDGESLRP PSLQEETRHQ 480 IEQNSGEVII GSIPVTLKSY IDQQQGSRPN ETKDTFSTEH DVLKKKNASE KLVKSNSLQP 540 GTNRVTSKHW RPVSRGETKN LPPVGRSNKD RDDDAIVSEA DDRTLSNGRS GQLQSLDNDG 600 CHNGKQFSSL SNDNAQQGFV PFSSKAAKEF LAKRWKEAIS GDHVKLVLSS GHEPTGQSDA 660 QHAPDPARRN APNQFGRTIH VARKLEKSVK FKYIPKQKVA V

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MPAAKLCSSG SLNAIKSDDE NDSLDSFIKQ AIGKEPLLPS PRTVDSPVHW IQLLHALDQP  60
DLPGWPLLTP VKVQMQKCEK CSREFCSPIN YRRHVRVHRR SLKINKEWHK NRDLLAAFWD  120
KLLLQQAGKV MSFNDIMLKV YVLFLQHHLY ICIWCLNYPQ DISGSSVVSA LASSLCRPGV  180
WTLPQPYVKA GATLLDIIQA KPSRLPIPSQ ELFSILDDAS ERTFLCAGTA ESVQNYVFDG  240
ETAKNSLELK NLVALASFLF EQLLVKAWVA DKDAEALRYQ KLLVEEEEAA QKRRAVLLER  300
KKQKKRRQKE QKAREQYYGC SRDLNDYVDA VDRPTSAEAS GASSPSGSNA NSQDMPTTLD  360
SVEPPNKESD EDIEAQFDKS SEHKTQGDPP AVELQMVGAN GHLHVATNRL QAPKLQRASR  420
HGLHANLNLR TSKPEHTHKL GPSKERSQQN ANKVWTKKLK SSNDGESLRP PSLQEETRHQ  480
IEQNSGEVII GSIPVTLKSY IDQQQGSRPN ETKDTFSTEH DVLKKKNASE KLVKSNSLQP  540
GTNRVTSKHW RPVSRGETKN LPPVGRSNKD RDDDAIVSEA DDRTLSNGRS GQLQSLDNDG  600
CHNGKQFSSL SNDNAQQGFV PFSSKAAKEF LAKRWKEAIS GDHVKLVLSS GHEPTGQSDA  660
QHAPDPARRN APNQFGRTIH VARKLEKSVK FKYIPKQKVA V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076143.1	0.0	uncharacterized protein LOC105160463 isoform X1
Refseq	XP_020548920.1	0.0	uncharacterized protein LOC105160463 isoform X1
TrEMBL	A0A4D9BNC7	0.0	A0A4D9BNC7_SALSN; Uncharacterized protein
STRING	Migut.F00325.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28