PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100078250061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

FAR1

Protein Properties

Length: 707aa MW: 81161.3 Da PI: 6.7694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100078250061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.5e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwe 77 +fY+++Ak++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w+ Ote100078250061\|100078250061 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPTADGKLHRNRKSSRCGCQAYMRIVKRAdfdVPEWR 139 6*************999887455667****************9***************98887676789 PP FAR1 78 vtkleleHnHela 90 vt +++ HnH+l Ote100078250061\|100078250061 140 VTGFNNAHNHDLL 152 **********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-9	274	327	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.668	507	543	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-8	514	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.0E-6	518	545	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MSEQTDVLNE TSENGSESSR DDNGTIEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPTADGKL HRNRKSSRCG 120 CQAYMRIVKR ADFDVPEWRV TGFNNAHNHD LLKSDEVQLL PAYCTMTPDD KSRICMYAKA 180 GMSVRQMLRL LELEKGIKLG CLPFSEIDVR SLLQSFRNVE RDDDPVDLLK MCKETKDRDP 240 NFKYNYRIDS NKRLECMAWS YASSIKLYAT FGDVVVFDTT YRLDAYDMLL GIWIGVDNHG 300 TYCFFGCLLL QDENVQSFSW GFKFLKKPVK PMTWSQYDDW KAEFQRLYNL HNVEEFEIGW 360 REMIDTYGLH GNKHIISLYA HRMYWALPFL RSYFFAGMSA TFQSEMINSY IQRFLSAQSM 420 LDNFIEQVAS LLDTKDQGGA KPRLLQKVPK TSLKTGSPIE SHAATVLTPY AFLRLQEELV 480 LAPQYATMLV DDSYFIVRHH TEIDGGCKVL WAPQDEFITC SCRHFEFSGI LCRHILRVLA 540 TNNCFQIPDQ YLPLRWRESS FTKHMRTTSG KVQLLQSMIS SLITESIETE DRLNVACDHI 600 ALVLARVKEF PSTSVDDSNG VTYTSPTASF ILPDVEDSDR IAQSFSGNPD ECLSFAKLKD 660 NRRSRDEIDM YRKRRRCAVP CCGQFGHEIG NCPMVTDDLN ADGLGFL

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MSEQTDVLNE TSENGSESSR DDNGTIEEIP EDTILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPTADGKL HRNRKSSRCG  120
CQAYMRIVKR ADFDVPEWRV TGFNNAHNHD LLKSDEVQLL PAYCTMTPDD KSRICMYAKA  180
GMSVRQMLRL LELEKGIKLG CLPFSEIDVR SLLQSFRNVE RDDDPVDLLK MCKETKDRDP  240
NFKYNYRIDS NKRLECMAWS YASSIKLYAT FGDVVVFDTT YRLDAYDMLL GIWIGVDNHG  300
TYCFFGCLLL QDENVQSFSW GFKFLKKPVK PMTWSQYDDW KAEFQRLYNL HNVEEFEIGW  360
REMIDTYGLH GNKHIISLYA HRMYWALPFL RSYFFAGMSA TFQSEMINSY IQRFLSAQSM  420
LDNFIEQVAS LLDTKDQGGA KPRLLQKVPK TSLKTGSPIE SHAATVLTPY AFLRLQEELV  480
LAPQYATMLV DDSYFIVRHH TEIDGGCKVL WAPQDEFITC SCRHFEFSGI LCRHILRVLA  540
TNNCFQIPDQ YLPLRWRESS FTKHMRTTSG KVQLLQSMIS SLITESIETE DRLNVACDHI  600
ALVLARVKEF PSTSVDDSNG VTYTSPTASF ILPDVEDSDR IAQSFSGNPD ECLSFAKLKD  660
NRRSRDEIDM YRKRRRCAVP CCGQFGHEIG NCPMVTDDLN ADGLGFL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082429.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_011082430.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_020550427.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A4D9AB63	0.0	A0A4D9AB63_SALSN; Uncharacterized protein
STRING	VIT_07s0005g01120.t01	0.0	(Vitis vinifera)
STRING	XP_009599705.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13535	14	16

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]