PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100068500161 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 535aa MW: 60092 Da PI: 7.413 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.3e-13 | 350 | 396 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h + ErrRR+++N++f+ Lr+llP+ +K +Ka++L ++eY++sL Ote100068500161|100068500161 350 MHHVISERRRREKLNESFHILRSLLPPG-----TKKDKASVLSSTTEYLSSL 396 57999*********************97.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.075 | 347 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.70E-11 | 349 | 401 | No hit | No description |
SuperFamily | SSF47459 | 4.84E-16 | 349 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-15 | 351 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.0E-11 | 351 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-15 | 353 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 535 aa Download sequence Send to blast |
MDSIFHLEDG DRAAFLEKMM QAFGCVYVCL KYYIPSYNCL KGLDGIYHER STSQLTLARR 60 LFDVYRESSS SPDLGGIPGL AFASNNPCMK LELHEFQRLV FDEIQRQFYQ VSLPFLTNIF 120 KNNKINTNFD ILIVQEAGIK TVVLMGCATG EIELGMSHDH PQTQVDLETE MRNFIHNNFP 180 HHTDPNMPYS SSSSSLRSLS VDSPEYPPIF NIPSVSRPPF APVGESLLEE ALRSAPPPPP 240 ATTHDQAILA LNQIRNAQFP RIESEEATMA KAILAVLCSP SSSSSHQNQN QTTTSAFRRY 300 RPSSAPRINA GVNQKQSKFK RAVLFFRNLN LRIRQEYSQT QGNRPTATQM HHVISERRRR 360 EKLNESFHIL RSLLPPGTKK DKASVLSSTT EYLSSLKSRV AELTKRDQLL ESELDSLRKP 420 QFGTDLAESS ASSAERVYVE IVQVSSSSPP AAEARLLELR VTVRGGISML DLLTRFIELL 480 KRQTNASLSS VESNTRMLGS VEVHAVIMRL RVEGDEFDES GFREAVTRVV DDSTN |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094007.1 | 1e-170 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A0H3YC34 | 0.0 | A0A0H3YC34_SALMI; Basic helix-loop-helix transcription factor | ||||
STRING | Migut.J00583.1.p | 1e-145 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4567 | 23 | 39 |