PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100063230091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 523aa    MW: 57609.1 Da    PI: 5.8362
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100063230091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71.1e-11219275155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Ote100063230091|100063230091 219 SQFRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 275
                                   789******************433.44555535555.779999**************98 PP
2AP246.68.4e-15320369355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Ote100063230091|100063230091 320 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 369
                                   9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.48E-14219285IPR016177DNA-binding domain
CDDcd000182.68E-17219285No hitNo description
Gene3DG3DSA:3.30.730.104.2E-12220284IPR001471AP2/ERF domain
SMARTSM003809.2E-23220289IPR001471AP2/ERF domain
PfamPF008479.5E-9220275IPR001471AP2/ERF domain
PROSITE profilePS5103216.911220283IPR001471AP2/ERF domain
PRINTSPR003675.5E-6221232IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17318378IPR016177DNA-binding domain
CDDcd000182.63E-23318379No hitNo description
Gene3DG3DSA:3.30.730.102.0E-18319377IPR001471AP2/ERF domain
PROSITE profilePS5103219.137319377IPR001471AP2/ERF domain
SMARTSM003803.9E-34319383IPR001471AP2/ERF domain
PfamPF008471.6E-9320369IPR001471AP2/ERF domain
PRINTSPR003675.5E-6359379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRVGAADA EIGATAAEQA EVEDNNGGGC FPPHHIPAMP LRSDHYWRYD  60
NAMNESNPNE EAPKFEDFLG CCYSNSPQNE PPEINMNMPP NFDDQKREAF NNAAMFYPPY  120
HYAVVPAAND AVYYGGGGGS GFKSWLPQPD KAVEEGGGGG HCDLQALSLT VKPSSQPDVE  180
AELPPHAAAD GKKRAVAKSS AAKEPVPRKS IDTFGQRTSQ FRGVTRHRWT GRYEAHLWDN  240
SCRKEGQTRK GRQGGYDKEE KAARAYDLAA LKYWGPTTHI NFPLSDYEKE LEEMENMSRQ  300
EFVAHLRRKS SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY  360
DIAAIKFRGT SAVTNFDINR YDVKRICSSS TLIGGDLAKR SSPKHVGPDE YNSCASSASP  420
RALLQITNGE ASSNELVDMM WNATSDEQSH DRANKDNGQS GPSSPAQMEQ VIGDGGGYXX  480
XXXXXXXLEG QKYEDDECDL GSSTRVADVG LVHQAPPFAL WND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072652.10.0AP2-like ethylene-responsive transcription factor AIL1, partial
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2G9HXS40.0A0A2G9HXS4_9LAMI; Uncharacterized protein
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]