PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100055980031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 346aa    MW: 39130 Da    PI: 8.0711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100055980031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.7e-065777323
                                  ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                  C+ CgksF ++  L  H++ H
  Ote100055980031|100055980031 57 CKECGKSFQSWKALFAHMKHH 77
                                  *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-6977No hitNo description
PfamPF139121.0E-4932IPR007087Zinc finger, C2H2
PROSITE profilePS501578.808931IPR007087Zinc finger, C2H2
SMARTSM003551.2931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.3675582IPR007087Zinc finger, C2H2
SMARTSM003550.0415577IPR015880Zinc finger, C2H2-like
PfamPF139126.8E-75777IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
PfamPF139121.1E-9212236IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162212239IPR007087Zinc finger, C2H2
SMARTSM003550.26212234IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
PfamPF139127.7E-10267289IPR007087Zinc finger, C2H2
PROSITE profilePS501578.58267294IPR007087Zinc finger, C2H2
SMARTSM003551.7267289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280269289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEDQKSQHT CKFCHKMFPC GRSLGGHMRS HLIPISSTQK KQSQHQEKPI SVDDKLCKEC  60
GKSFQSWKAL FAHMKHHANV DEDGSLNSSG HDQKTDTESA TLCRKKRSER TKRYMNSNLD  120
EQEQEEVALS LIMLSMDCVS ESHNTSSESS EAKRLARKRV KSSDDIECEV NSPKDGSSVN  180
PFGSDHKKKR NSSKKKCTDS TNCEVMMNGC KFSCIICKKG FPSYQALGGH RASHKKXXXX  240
XXXXCCAPPT DDLQEKNQVE CNKSREHECL ICFRVFPSGQ ALGGHKRSHL MSDQGKSSSE  300
KQIPEIREFL DLNLPAPDEE EDCNEFKTWW VGNKNHHKPL LGLLSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072829.13e-88zinc finger protein ZAT4-like
TrEMBLA0A2G9HIF75e-87A0A2G9HIF7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241