PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100043540071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 638aa    MW: 70725.9 Da    PI: 5.5733
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100043540071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.61.2e-18321421199
                                   EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 
                                   f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++g
  Ote100043540071|100043540071 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAG 400
                                   99**************************555567778***************9989999999***9.************** PP

                                   -EEEEEE-SSSEE..EEEEE-S CS
                            B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                   D+v+F++++  e++l+++++++
  Ote100043540071|100043540071 401 DTVTFSRMD-PEGKLLMGFRKA 421
                                   ******876.888888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-30313424IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-19318420IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-22319420No hitNo description
SMARTSM010191.9E-20321422IPR003340B3 DNA binding domain
PfamPF023624.1E-16321421IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152321422IPR003340B3 DNA binding domain
PROSITE profilePS5105014.128577627IPR011124Zinc finger, CW-type
PfamPF074965.3E-10582624IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MEGGVCMNGM CASSSSVEWK RGWPLRSGGF ATLCDNCGFV ESDNVEQSSE NNDNSSIIPY  60
AAWTAYKDLV FCETFHSEET GWRECNSCGK RLHCGCIAST TLLELLDTGG VNCKGCSKSL  120
TLPYTPLEEK HKTLGFSSEN GTDQNLERTA PAHSGDDAKI DISQNANVTS RKPEDDLTDC  180
GELGYKLLSS SIQLPIGPPK TSDMLHENKS MHKPFVETNL SISLSPSSNS NALSGAVNEE  240
RQLNAAISSL SRPRHLLPRV PTVLATGLET NSSPISQLRV ARPPVEGRVK NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI  360
QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLLMGFRK  420
ASNNVSMQKD SQYPIDVSAF QGDALLGSAE NLPIISGYSG LLQSLKGNKG PSMTLFPKHV  480
YSGNISPQIS DKNVCKSGEM LLPSDRKRRN IGAKSKRLLI DDHDSFELRL SWEEVQDMLR  540
PPPNVEPTIV SVEDHEIEEF DEAPVFGKQS VFTLRLSGEQ DQWTQCDCCK KWRRVPTDLL  600
LPPKWMCQDN INDQTRASCS VPAEMDSREV ENLLRMHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-702994282131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095138.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553390.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_020553391.10.0B3 domain-containing transcription repressor VAL2 isoform X1
TrEMBLA0A4D8Z0Q20.0A0A4D8Z0Q2_SALSN; Uncharacterized protein
STRINGMigut.J00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365