PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100043540071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | B3 | ||||||||
Protein Properties | Length: 638aa MW: 70725.9 Da PI: 5.5733 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.6 | 1.2e-18 | 321 | 421 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkeg 77 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++g Ote100043540071|100043540071 321 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAG 400 99**************************555567778***************9989999999***9.************** PP -EEEEEE-SSSEE..EEEEE-S CS B3 78 DfvvFkldgrsefelvvkvfrk 99 D+v+F++++ e++l+++++++ Ote100043540071|100043540071 401 DTVTFSRMD-PEGKLLMGFRKA 421 ******876.888888888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-30 | 313 | 424 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.44E-19 | 318 | 420 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.45E-22 | 319 | 420 | No hit | No description |
SMART | SM01019 | 1.9E-20 | 321 | 422 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-16 | 321 | 421 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 321 | 422 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.128 | 577 | 627 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 5.3E-10 | 582 | 624 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 638 aa Download sequence Send to blast |
MEGGVCMNGM CASSSSVEWK RGWPLRSGGF ATLCDNCGFV ESDNVEQSSE NNDNSSIIPY 60 AAWTAYKDLV FCETFHSEET GWRECNSCGK RLHCGCIAST TLLELLDTGG VNCKGCSKSL 120 TLPYTPLEEK HKTLGFSSEN GTDQNLERTA PAHSGDDAKI DISQNANVTS RKPEDDLTDC 180 GELGYKLLSS SIQLPIGPPK TSDMLHENKS MHKPFVETNL SISLSPSSNS NALSGAVNEE 240 RQLNAAISSL SRPRHLLPRV PTVLATGLET NSSPISQLRV ARPPVEGRVK NQLLPRYWPR 300 ITDQELQQIS GDSNSTIVPL FEKVLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI 360 QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLLMGFRK 420 ASNNVSMQKD SQYPIDVSAF QGDALLGSAE NLPIISGYSG LLQSLKGNKG PSMTLFPKHV 480 YSGNISPQIS DKNVCKSGEM LLPSDRKRRN IGAKSKRLLI DDHDSFELRL SWEEVQDMLR 540 PPPNVEPTIV SVEDHEIEEF DEAPVFGKQS VFTLRLSGEQ DQWTQCDCCK KWRRVPTDLL 600 LPPKWMCQDN INDQTRASCS VPAEMDSREV ENLLRMHK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-70 | 299 | 428 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095138.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_020553390.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_020553391.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
TrEMBL | A0A4D8Z0Q2 | 0.0 | A0A4D8Z0Q2_SALSN; Uncharacterized protein | ||||
STRING | Migut.J00040.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |