PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100038880001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 367aa MW: 40260.6 Da PI: 9.5185

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100038880001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Ote100038880001\|100038880001 124 WKCEKCSKKYAVQSDWKAHSKTC 146 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.3E-5	112	145	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MMSGDVFSVP NSAAFPQTNP NSKPPSKKRR NLPGTPDVDG DKPIHLRNLQ QRLSEGPESX 60 XXXXXXXGHN LPWKLKQRAN KDQIKKKVYI CPEKSCVHHD PARALGDLTG IKKHFSRKHG 120 EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS RKDSFITHRA FCDALAEESA 180 RNLSFRNDDL SGNLITPQPN SGFNSFAGNS ILADNNLQKP RLSLCDEGGA DDGRLSGFAL 240 LRQPKLCEIA GVXXXXXXXX XXXXXXXXKA AQMGSTKSSP AFFGNAVGVM NSSSPPPSVM 300 NFGACNNDLD LHQSMNRHSG LMHGVENSLT RDFLGVGGEG GPFLPQELVK FASMAPAMGL 360 GHFTGNH

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MMSGDVFSVP NSAAFPQTNP NSKPPSKKRR NLPGTPDVDG DKPIHLRNLQ QRLSEGPESX  60
XXXXXXXGHN LPWKLKQRAN KDQIKKKVYI CPEKSCVHHD PARALGDLTG IKKHFSRKHG  120
EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS RKDSFITHRA FCDALAEESA  180
RNLSFRNDDL SGNLITPQPN SGFNSFAGNS ILADNNLQKP RLSLCDEGGA DDGRLSGFAL  240
LRQPKLCEIA GVXXXXXXXX XXXXXXXXKA AQMGSTKSSP AFFGNAVGVM NSSSPPPSVM  300
NFGACNNDLD LHQSMNRHSG LMHGVENSLT RDFLGVGGEG GPFLPQELVK FASMAPAMGL  360
GHFTGNH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-38	120	189	3	72	Zinc finger protein JACKDAW
5b3h_F	8e-38	120	189	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542707.1	1e-101	PREDICTED: zinc finger protein JACKDAW-like isoform X1
Refseq	XP_021973190.1	1e-101	zinc finger protein JACKDAW isoform X2
TrEMBL	A0A4D8ZH05	1e-117	A0A4D8ZH05_SALSN; Uncharacterized protein
STRING	Gorai.009G418600.1	2e-97	(Gossypium raimondii)
STRING	PGSC0003DMT400027159	3e-97	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350