PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100030700021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | YABBY | ||||||||
Protein Properties | Length: 185aa MW: 21048.1 Da PI: 9.1133 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 184 | 8.3e-57 | 2 | 157 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 + seq+ y+ CnfCn +lavsvP +sl+ vvtvrCGhC++l +vn+a a ++ + ++ ++ + + +++ Ote100030700021|100030700021 2 DVSEQLRYIPCNFCNIVLAVSVPCSSLLDVVTVRCGHCSNLWTVNMAAAP--FPSLVQ-----PPSSCQDFQAPNCIPTEY 75 579***************************************97776554..454444.....233444444433333333 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 k + s+s+ ++k++ + ++ p++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+i Ote100030700021|100030700021 76 --KVDLGSSSKWNYKIQPSITK-KPEPRIANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 153 ..33344444444455444433.34445689************************************************** PP YABBY 167 hfgl 170 hfgl Ote100030700021|100030700021 154 HFGL 157 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.9E-66 | 3 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 93 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 104 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDVSEQLRYI PCNFCNIVLA VSVPCSSLLD VVTVRCGHCS NLWTVNMAAA PFPSLVQPPS 60 SCQDFQAPNC IPTEYKVDLG SSSKWNYKIQ PSITKKPEPR IANRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE SNSQPKLNEG LEKHQFRRAS 180 MRDKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078402.1 | 3e-94 | axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 1e-77 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A0X9R6C8 | 1e-108 | A0A0X9R6C8_MENSP; YABBY family protein 6 | ||||
STRING | VIT_11s0016g05590.t01 | 9e-91 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Publications ? help Back to Top | |||
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