PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100022550201
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 291aa    MW: 32464.7 Da    PI: 10.0853
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100022550201genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.12.9e-19162195134
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                   Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Ote100022550201|100022550201 162 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 195
                                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.796156192IPR000679Zinc finger, GATA-type
SMARTSM004011.5E-20156208IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-13156196No hitNo description
Gene3DG3DSA:3.30.50.109.1E-16160195IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.07E-12161191No hitNo description
PfamPF003205.8E-17162195IPR000679Zinc finger, GATA-type
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNLNSPPSHF PTQQISHDND HELYHPQPFL PNRAPSLSCH FFFDSTLDHS RFYDHQLYRP  60
NHVPGDQNYG VSTYEVKNNR GLELGQWEKE DKELKSRKNP MKWMSSEMRV MHKMKAAGHD  120
RAALKITSSA DQKLQASSSS AETDYLSSNS SSYSNNSPIR VCSDCNTTKT PLWRSGPKGP  180
KSLCNACGIR QRKARRAMAA AAAAKAGDSD QSPAKSKLQH KGKLGKKGHA SHLKKRCKTE  240
VGLPSTEQKK LGFEDFLINL SKKLAFHRVF PDEEKDAAIL LMALSSGLVN G
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078200.23e-99LOW QUALITY PROTEIN: putative GATA transcription factor 22
TrEMBLA0A4D9BZW71e-104A0A4D9BZW7_SALSN; Uncharacterized protein
STRINGMigut.J00606.1.p6e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249