PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100019310001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 194aa MW: 22066.9 Da PI: 7.2576 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.9 | 4.6e-20 | 27 | 79 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++++eqle Le+ F+++ +++ +++ +LAk lgL+ rq+ vWFqNrRa++k Ote100019310001|100019310001 27 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWK 79 55699***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.1 | 1.4e-39 | 26 | 116 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kk+rls+eq+++LE+sF+ee kL+p+rK++la++Lglqprq+avWFqnrRAR+k kqlE+ y+aLk++yda+++++++L++ Ote100019310001|100019310001 26 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWKGKQLERLYDALKQEYDAVSRDKHKLQQ 106 9******************************************************************************** PP HD-ZIP_I/II 83 eveeLreelk 92 ev +Lr+ lk Ote100019310001|100019310001 107 EVLALRAILK 116 ******8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-19 | 18 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.3E-18 | 24 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.20E-16 | 26 | 82 | No hit | No description |
Pfam | PF00046 | 3.3E-17 | 27 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-21 | 28 | 88 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.7E-6 | 52 | 61 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.7E-6 | 61 | 77 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-7 | 81 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MKQGASGIME KXXXXXXXXY GGQDPKKKRL STEQLESLEN SFQEEIKLDP DRKMKLAKDL 60 GLQPRQIAVW FQNRRARWKG KQLERLYDAL KQEYDAVSRD KHKLQQEVLA LRAILKDQVT 120 KKQVSAGDTD VSGEXXXXGE ETVESTSIPS SEKGRGESNN NVNQVGECTY VLNVEDYSPM 180 MMTPYNWGAL PSCP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012831797.1 | 8e-92 | PREDICTED: homeobox-leucine zipper protein ATHB-22 | ||||
Swissprot | Q9LZR0 | 3e-51 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A4D9C620 | 2e-98 | A0A4D9C620_SALSN; Homeobox-leucine zipper protein | ||||
STRING | Migut.J00491.1.p | 3e-91 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Publications ? help Back to Top | |||
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