PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100009440121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | YABBY | ||||||||
Protein Properties | Length: 147aa MW: 16629.1 Da PI: 10.4794 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 153.9 | 1.4e-47 | 1 | 121 | 31 | 170 |
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111 +f++vtvrCGhC++llsvn+a++ q +e++ + ++++++ s++++++ ++l++ p+ Ote100009440121|100009440121 1 MFTIVTVRCGHCANLLSVNMATFLQDFQVEKQ-----------QSPGGGMEIRE----IGSSTSNRTRFHLDNL---PHPK 63 699****************9999888777765...........22222333332....2333333444454433...4566 PP YABBY 112 vppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +pp irPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl Ote100009440121|100009440121 64 MPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 121 777.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-50 | 1 | 121 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.09E-8 | 62 | 115 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.6E-5 | 69 | 115 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MFTIVTVRCG HCANLLSVNM ATFLQDFQVE KQQSPGGGME IREIGSSTSN RTRFHLDNLP 60 HPKMPPIRPP EKRQRVPSAY NRFIKEEIQR IKASNPEISH REAFSTAAKN WAHFPHIHFG 120 LKVESNKQAK LDHPVAGEAM AQKSLGF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088989.1 | 4e-70 | putative axial regulator YABBY 2 isoform X1 | ||||
Refseq | XP_011088990.1 | 4e-70 | putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 6e-57 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A0X9RCW2 | 3e-73 | A0A0X9RCW2_MENSP; YABBY family protein 2 | ||||
STRING | XP_004487438.1 | 6e-62 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Publications ? help Back to Top | |||
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