PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100001760011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 294aa    MW: 33133.8 Da    PI: 5.2049
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100001760011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1794.2e-5636131297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd+lwa++tlGfedyv+p
  Ote100001760011|100001760011  36 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAITTLGFEDYVNP 116
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk+yl+kyr++egek
  Ote100001760011|100001760011 117 LKIYLAKYRDIEGEK 131
                                   ************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-5229147IPR009072Histone-fold
SuperFamilySSF471131.34E-4038149IPR009072Histone-fold
PfamPF008085.7E-2841105IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.0E-196987No hitNo description
PROSITE patternPS0068507288IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.0E-1988106No hitNo description
PRINTSPR006152.0E-19107125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MNKRDRDDFE DDENPQIGTT RISPDTNTND QNPKNKEQDR FLPIANVGRI MKKVIPGNGK  60
ISKDAKETVQ ECVSEFISFV TGEASDKCQR EKRKTINGDD ILWAITTLGF EDYVNPLKIY  120
LAKYRDIEGE KLNVPKQQQQ RSMHHDHTTS NNLSYNSLSY ISQPPFVPTH PLPFSQNSIQ  180
TPSLSQHDPL DDHWTYEMAN AEVSNIINFC ILVHPICGTA IGVVGVVALS YRDRRTSIVD  240
IMAMSSNVQH VEKRQQLCWQ HGDSRCDTAS KAVEDFGFDG DDDNAGNARD CGSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4336126292Transcription factor HapC (Eurofung)
4g92_B3e-4336126292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099714.16e-81nuclear transcription factor Y subunit B-7
SwissprotQ9SIT92e-67NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLA0A4D8ZYE99e-89A0A4D8ZYE9_SALSN; Uncharacterized protein
STRINGcassava4.1_024313m2e-74(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]