PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_27450A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 675aa    MW: 73323.1 Da    PI: 8.8372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_27450AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.11.4e-17431480255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Oropetium_20150105_27450A 431 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 480
                                889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513755.634262292IPR002885Pentatricopeptide repeat
PfamPF015350.54267293IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.374293327IPR002885Pentatricopeptide repeat
PfamPF015350.53295323IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.676371407IPR002885Pentatricopeptide repeat
PfamPF015359.2E-8374399IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.5E-6374399IPR002885Pentatricopeptide repeat
Gene3DG3DSA:4.10.280.101.8E-23426500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-18427497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78429479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-15431480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-16431484No hitNo description
SMARTSM003532.6E-13435485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MGIKGNKAAT HEHDFLSLYT ATAAKDSHPL QLHGADSKTP PPSQGFVLKT HDFLQPLDKP  60
GEATSSGADA TPVCVVTKPQ ALPLPGGVGT FSIRPAAAAV VKAEPPPFRK KKKNKAKAKA  120
KAGCFCLCVS SCCVLHSAAG QQHHHQWALP FAGAGQVGPL QHQLQPERKA WGGGTMDSGS  180
RSSGGAGFDD DDGLAARREV SSSLKANHLR LPSLAFRHYL ALRTHHPSFL PPAPAIADLL  240
KYAPGRPAHA HALRVASHAV DPRFLDNTLI TMYFACGDTW SARRVFHGMC DRDVISWTSL  300
ISGLVQNSCP LQGLHHFVAM MRCEVRPDFV PLVSVLKACM ELDDFLAMYA RFGYILAARA  360
LFDRVPSPHV NVILWNAMIS GYSKNGFASE AVHLFKRMRM VARNMIPDSV TLLSGGSCSD  420
GGTDQRPNTP RSKHSATEQR RRSKINDRFQ ILRELLPHSD QKRDKATFLL EVIEYIRFLQ  480
EKVQKFEATF PEWNQENAKV LPWSKGQIPG EALPDPSQFM RNGSSPGLNF TGKLDDNHNT  540
VTSAAASGAQ DEAETDHMAN NATSQCQPQW TGPSPVDDCA VNSEMLNNQQ LTIDEGTISV  600
SSQYSQELLN SLTQALQSSG IDLSQASISV QINLGKRAVK RPAAGVSSIS KEPTETQPSS  660
NYKTGHQQTI WVGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-1622841454315PLS9-PPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_27450A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676941e-130BT067694.1 Zea mays full-length cDNA clone ZM_BFc0130K07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008650819.11e-147putative HLH DNA-binding domain superfamily protein isoform X2
STRINGSi029604m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-59BES1-interacting Myc-like protein 2