PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_26110A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 344aa    MW: 35538.5 Da    PI: 7.018
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_26110AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.7e-15200246455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h ++ErrRR++iN++f eL  ++P +     kK++Ka+iL  Av+Y+++Lq
  Oropetium_20150105_26110A 200 DHIIAERRRREKINQRFIELSAVIPGL-----KKMDKATILGDAVNYVRELQ 246
                                5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.929196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-19200254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.11E-16201250No hitNo description
SuperFamilySSF474592.62E-17201254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-12201246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDDSSMFLQW AMNQLHQQNP AAAADAAGGV PAYPDGGGGS GGAGDREATA FPSLQALRYA  60
SGQSQQTQTA GAAAAVRARD LKVQVDHLTN SNSWSSGDSP GGAAMDYDAA AGWSHSPQTA  120
RGSRTTGLLG GGSSSRPVSW NFSAAAARPT DETGRGCDVV ALPDAGATVA RAPHGSTGRR  180
GGSSSGPTAA ASSSPGPVQD HIIAERRRRE KINQRFIELS AVIPGLKKMD KATILGDAVN  240
YVRELQDKVK TLEKDGVHHA AGGSTIQSTV LVKKPCPMPD DEGAATSGGL QQLPEIEARL  300
SDSSVLLRIH CDNARGLLVN VLTEVEKMSL AITHTNVMPF PAPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15200255863Transcription factor MYC2
5gnj_B3e-15200255863Transcription factor MYC2
5gnj_E3e-15200255863Transcription factor MYC2
5gnj_F3e-15200255863Transcription factor MYC2
5gnj_G3e-15200255863Transcription factor MYC2
5gnj_I3e-15200255863Transcription factor MYC2
5gnj_M3e-15200255863Transcription factor MYC2
5gnj_N3e-15200255863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERRRRE
2205210RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_26110A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.11e-139transcription factor bHLH25-like
RefseqXP_025808673.11e-139transcription factor bHLH25-like
RefseqXP_025808674.11e-139transcription factor bHLH25-like
RefseqXP_025808675.11e-139transcription factor bHLH25-like
TrEMBLA0A2T7EJP41e-139A0A2T7EJP4_9POAL; Uncharacterized protein
STRINGPavir.J30022.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-37bHLH family protein