PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_25411A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 21720.9 Da PI: 10.2307 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.6 | 1.9e-28 | 4 | 109 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal...peeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a ++ r+++++sl+yeA+ r+ +PvyG+ Oropetium_20150105_25411A 4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgqgADHLRPAVFRSLLYEACGRIVNPVYGS 87 6**************************************************9876557888*********************** PP DUF260 77 vgvilklqqqleqlkaelallk 98 vg+++++q+q q+++e++l + Oropetium_20150105_25411A 88 VGLLWSGQWQAVQAAVEAVLKG 109 ***************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.614 | 3 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-23 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAPGQG 60 ADHLRPAVFR SLLYEACGRI VNPVYGSVGL LWSGQWQAVQ AAVEAVLKGD PVVRVASASA 120 DQPEAAATPP LGTRAACDIR HVAKDRDAAA AADLLRVSRV GRTKFKRASS SSTTSKTKTA 180 GNKPNGKRAS PSPGILTQEE HEPEP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_25411A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954764 | 1e-128 | EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728404 | 1e-128 | KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628244.1 | 1e-90 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 2e-70 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A0E0MX47 | 2e-89 | A0A0E0MX47_ORYRU; Uncharacterized protein | ||||
TrEMBL | B9EX60 | 2e-89 | B9EX60_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI01G19440.1 | 4e-90 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67100.1 | 5e-58 | LOB domain-containing protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_25411A |