PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_24670A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 23753.8 Da PI: 5.5035 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.9 | 3.4e-38 | 29 | 130 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++apyf +e+ +++fa+vh++FGasnv+kll+++pe++r da+ +++yeA++r+++PvyG+v+ il+l Oropetium_20150105_24670A 29 PCGACKFLRRKCVSECIFAPYFEQEHgAAHFAVVHRVFGASNVSKLLHQIPEDKRLDAVVTMCYEAQCRLHNPVYGCVSYILAL 112 7*********************999979******************************************************** PP DUF260 84 qqqleqlkaelallkeel 101 ++q+++l++el++++++l Oropetium_20150105_24670A 113 REQIATLQSELNYVQNQL 130 **************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.357 | 28 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.0E-38 | 29 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MNMFVGGASS GGIGGQGGGH GGDGSGGGPC GACKFLRRKC VSECIFAPYF EQEHGAAHFA 60 VVHRVFGASN VSKLLHQIPE DKRLDAVVTM CYEAQCRLHN PVYGCVSYIL ALREQIATLQ 120 SELNYVQNQL ATTEQQQALV PPLPALPPML MTVDGFSDIN VDLSFLLDEE APPQQQQQYV 180 SMGAPSGGAG GSGAIGDTGN LDALAREPVR HGQKAGGPAP PPSGTYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-33 | 26 | 130 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-33 | 26 | 130 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_24670A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510942.1 | 5e-56 | LOB domain-containing protein 30-like | ||||
Refseq | XP_008776002.1 | 7e-56 | LOB domain-containing protein 18-like | ||||
TrEMBL | A0A426Z2A6 | 9e-55 | A0A426Z2A6_ENSVE; Uncharacterized protein | ||||
STRING | XP_004510942.1 | 2e-55 | (Cicer arietinum) | ||||
STRING | XP_008776002.1 | 3e-55 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 2e-51 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_24670A |