PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_23101A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 20093.3 Da PI: 9.9758 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.7 | 3.5e-19 | 16 | 60 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kri s rqv fskRr+g++KKA+ELS+LC++ v ++ fs+ g+ Oropetium_20150105_23101A 16 KRIARVSARQVCFSKRRQGLFKKASELSILCGTMVGIVAFSPAGR 60 68888999**********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-25 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.675 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.18E-23 | 8 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-22 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MREGKKSMGR RRIQIKRIAR VSARQVCFSK RRQGLFKKAS ELSILCGTMV GIVAFSPAGR 60 PYSLGYPSIH AVIDEFLTLG NHSSPTMDHR IPNVSGVQNA LVLEYNELKE LVRTENLRTK 120 KLKEEIEQKD CKHYTPDISG LGPVELHEIY NNLKALDGDI KGKIFEVAFG LPNIDPFVG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_23101A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-29 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_23101A |