PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20385A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 273aa    MW: 29005.3 Da    PI: 9.303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20385AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-1374120354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                r+h+e+Er+RR+riN  +++Lr+llP+a      +++Ka+ L ++v+++++L
  Oropetium_20150105_20385A  74 RSHSEAERKRRQRINAHLATLRTLLPSA-----SRMDKAALLGEVVRHVREL 120
                                58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.81571120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-1274123No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1374123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1374128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1177126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.0E-5175218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSLVASPGAP RRAGSIDRSP LPFYTPGPAT FPLPVLWLVD EGGEEARGRE GGMATDGECS  60
TPASAAARKG PAVRSHSEAE RKRRQRINAH LATLRTLLPS ASRMDKAALL GEVVRHVREL  120
RAKASVAAAT EGVLLPGEGD EVGVVVEDDD DHYHHHCYGG AAAAGRHPRR VRAWVCCADR  180
PGLLSDLGRA VRSASAHPVR AEIATVGGRT RSVMELXXXX XXXXXXGRAE ALSTLRAVLR  240
SVLLDGAREE HLAAGADGYK RPRFSAQIGE VQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20385A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279684e-51KJ727968.1 Zea mays clone pUT6081 bHLH transcription factor (bHLH169) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444528.19e-74transcription factor bHLH30
TrEMBLA0A0E0ESZ96e-73A0A0E0ESZ9_9ORYZ; Uncharacterized protein
STRINGOMERI09G10040.11e-73(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-22bHLH family protein