PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20331A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 494aa    MW: 54019.2 Da    PI: 8.7586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20331AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.11.3e-17210259255
                                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Oropetium_20150105_20331A 210 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 259
                                889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-24207280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-18208282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.66E-16210263No hitNo description
PfamPF000104.3E-15210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MGLQGDKATH DFLSLYSAAK DAALPLLPES KKAPPASQGF FLKTHDFLQP LERPSSSPSP  60
PQQQQAAAPE KPLNARHALP GGVGTFSISR PAAAADLPGA VKQEPAFGLW GQPEPRGHPW  120
SLPFAARCVA VASARPQQQH HTAMPQERKV GGGFMDAGSR SSGGAGFEDD DGHAARREVS  180
SSLKELRVET KXXXXXXXXX XXXQLPNTPR SKHSATEQRR RSKINDRFQI LREILPQNDQ  240
KRDKASFLLE VIEYIRFLQE KVQKYEVSHQ EWNQENAKVV PWSNIYFRSF WKNGQNKDEI  300
NGDAPSDPSQ IIKNGSSLGF PFALKPGDDN NAAAFEIASG GRELSEANQE GCVSYKEADT  360
PSNIPNNVVS QKPAQPAKSL PTEDRAVNSE MLKDPELAID EGTISLSSQY SQGLLATLNH  420
ALQNSGIDLS QASISVQINL GKRAIKRPAP GANCALKELN NQTSQDQAIW QQQRSGDVAL  480
EHSQATKRRK SER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20331A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822754.10.0transcription factor BIM1-like isoform X1
TrEMBLA0A2T7D8Q50.0A0A2T7D8Q5_9POAL; Uncharacterized protein
STRINGSi013622m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-50BES1-interacting Myc-like protein 2