PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19590A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 427aa    MW: 45858.9 Da    PI: 4.7991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19590AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13233278555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                h + Er+RR+++N++f++Lr+llP++      K +K ++L  A  Y+k+L+
  Oropetium_20150105_19590A 233 HMMSERKRREKLNDSFQTLRSLLPPC-----SKKDKTTVLVNAASYLKKLE 278
                                7899*********************9.....699**************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17225294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.377228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10233278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-13233282No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16233295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-13234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDEEVWRGLD LQLPANGVAG GLHGAADGDA IHDPFWPALA DDDITIAAGP AGSNKAVVAE  60
DMVLDVDTSC FMVAAEHQQQ DLLMMNMNHD QIMYYSXXXX XXXXXXXXXX DSAGSSPFSF  120
DAALAPTTTT FPSTTDPFAG DDAAIMRAMM AVLSSASPSS SESSSPPHWR HESSSSSLPV  180
YPPCGVDNNN NNNNGVLVRS TSLPMAPPEK KQHDDATRSA PGSSSNNSSQ VYHMMSERKR  240
REKLNDSFQT LRSLLPPCSK KDKTTVLVNA ASYLKKLEAE VSELEEKNAK LERHVPREDG  300
GAATTRAAEA AAHRRAKVQI SRAPSSSDAA DQVNLTVMVM VECDIVDLVL HVLERLRWMA  360
GVSVLSVDAD TYSPQVLLKA IASIKLQITD GDCWNEASFH EAMKKVVHDA TSPFSCASAA  420
PLVLAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236241ERKRRE
2237242RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19590A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455828.11e-124putative transcription factor bHLH041
TrEMBLC5XNS91e-123C5XNS9_SORBI; Uncharacterized protein
STRINGSb03g025860.11e-123(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-25bHLH family protein