PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19015A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 395aa    MW: 43991.9 Da    PI: 7.0267
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19015AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.41.2e-31106159255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  Oropetium_20150105_19015A 106 PRLRWTPDLHMAFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 159
                                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-29102160IPR009057Homeodomain-like
PROSITE profilePS5129412.601102162IPR017930Myb domain
SuperFamilySSF466893.4E-14105160IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-22106161IPR006447Myb domain, plants
PfamPF002496.1E-9107158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MVARADQLMV REVTGKQVLE VLEDEEERSM DHNKQALDLN DAVMSEEGEV GDEDDEDDGG  60
STSDAAGSRS SSNNSSTNNK DSESKPKGDG EKRVPSVRPY NRSKLPRLRW TPDLHMAFVH  120
AVERLGGQER ATPKLVLQMM NVRGLSIAHV KSHLQMYRSK KLDQDGRPRG ALSSSVYSPM  180
DFHFMRGDRR FHNMSFLQRA ATLSSSSFGP EHGGFFASRN GGRPEVSRLY GLLQHQQPQM  240
QSFNFRSSRF RRHEWSLNQR EESTITRKEI LKQPSQPQPF ASSPALIRSE RRWWPFTDDA  300
GAAVTAAGGE QAIMVDRGRD VIDSGDSIGS RSRLLSVAVS GERHLPFRWL PGTGSDVVGH  360
VSNITTIKRS SDPVVIDEAP DAQELEVYLI SPPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-18107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-18107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-18107161357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-18107161357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19015A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056131e-39AP005613.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09.
GenBankAP0149581e-39AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-39CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824416.11e-133uncharacterized protein LOC112899951 isoform X2
TrEMBLA0A2T7F4561e-132A0A2T7F456_9POAL; Uncharacterized protein
STRINGSi016955m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-35G2-like family protein